Wall clock time and date at job start Mon Mar 30 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86793 * 120.00467 * 2 1 4 4 H 1.48498 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.48512 * 109.46938 * 299.99922 * 3 2 1 6 6 H 1.48501 * 109.47036 * 59.99376 * 3 2 1 7 7 C 1.39051 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36872 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00066 * 180.02562 * 9 7 2 11 11 O 1.21591 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.47728 * 119.99696 * 179.97438 * 10 9 7 13 13 C 1.39652 * 120.14482 * 180.02562 * 12 10 9 14 14 C 1.37938 * 119.84358 * 180.30595 * 13 12 10 15 15 C 1.38382 * 120.14960 * 359.42095 * 14 13 12 16 16 C 1.50694 * 119.84655 * 180.28501 * 15 14 13 17 17 N 1.46898 * 109.46959 * 270.32071 * 16 15 14 18 18 C 1.38377 * 120.30556 * 0.60285 * 15 14 13 19 19 C 1.37943 * 120.15046 * 359.67749 * 18 15 14 20 20 H 0.97003 * 119.99648 * 0.02562 * 1 2 3 21 21 H 0.97007 * 119.99994 * 359.97438 * 9 7 2 22 22 H 1.08002 * 120.07603 * 0.02562 * 13 12 10 23 23 H 1.07998 * 119.92553 * 179.70099 * 14 13 12 24 24 H 1.09003 * 109.47487 * 30.32036 * 16 15 14 25 25 H 1.08995 * 109.47294 * 150.31892 * 16 15 14 26 26 H 1.00901 * 111.00549 * 56.04646 * 17 16 15 27 27 H 1.00901 * 111.00366 * 180.02562 * 17 16 15 28 28 H 1.07997 * 119.92631 * 179.70388 * 18 15 14 29 29 H 1.07996 * 120.07604 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6176 0.0000 4 1 3.7077 1.3462 0.0006 5 1 1.8890 2.3964 -1.2126 6 1 1.8889 2.3964 1.2124 7 6 2.0088 -1.2043 0.0005 8 1 3.0888 -1.2044 0.0010 9 7 1.3244 -2.3896 0.0005 10 6 1.9982 -3.5569 0.0016 11 8 3.2141 -3.5569 0.0030 12 6 1.2594 -4.8361 0.0022 13 6 1.9544 -6.0474 0.0038 14 6 1.2584 -7.2382 -0.0021 15 6 -0.1254 -7.2345 0.0025 16 6 -0.8790 -8.5395 0.0026 17 7 -1.1217 -8.9647 -1.3824 18 6 -0.8205 -6.0379 0.0005 19 6 -0.1370 -4.8397 0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 0.3543 -2.3895 0.0005 22 1 3.0345 -6.0517 0.0050 23 1 1.7945 -8.1757 -0.0057 24 1 -0.2908 -9.2987 0.5180 25 1 -1.8321 -8.4086 0.5148 26 1 -0.2566 -9.0308 -1.8974 27 1 -1.6264 -9.8380 -1.4094 28 1 -1.9004 -6.0421 -0.0007 29 1 -0.6806 -3.9065 -0.0015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040859956.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:39 Heat of formation + Delta-G solvation = -43.361253 kcal Electronic energy + Delta-G solvation = -13971.567218 eV Core-core repulsion = 11471.937730 eV Total energy + Delta-G solvation = -2499.629489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91384 -39.30480 -36.16820 -35.60539 -33.50874 -31.82187 -31.50468 -27.55544 -25.88929 -23.48880 -22.95616 -21.05805 -20.20755 -18.41651 -17.23203 -16.95426 -16.30237 -15.79461 -15.74200 -15.54056 -15.50384 -14.98560 -14.49949 -14.11055 -13.57360 -13.43627 -13.21114 -12.93721 -12.57572 -12.23707 -12.13179 -11.88844 -11.63207 -10.55183 -10.16839 -9.91834 -9.79364 -9.49245 -8.58722 -6.04171 -0.04703 0.46707 1.36826 1.39308 1.54749 2.03941 2.24690 2.83438 3.09531 3.27352 3.78247 3.86359 4.00184 4.07083 4.25182 4.40723 4.47920 4.72379 4.75588 4.97635 5.10896 5.29886 5.39965 5.51292 5.59562 5.90303 6.00629 6.24992 6.46767 6.66342 6.98967 7.39724 7.96420 8.58921 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.059480 B = 0.005938 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.630012 B = 4713.933819 C = 5093.963758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.010 4.010 3 Si 1.001 2.999 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.340 4.340 8 H 0.083 0.917 9 N -0.552 5.552 10 C 0.460 3.540 11 O -0.640 6.640 12 C -0.128 4.128 13 C -0.088 4.088 14 C -0.112 4.112 15 C -0.074 4.074 16 C 0.107 3.893 17 N -0.856 5.856 18 C -0.101 4.101 19 C -0.107 4.107 20 H 0.283 0.717 21 H 0.398 0.602 22 H 0.119 0.881 23 H 0.154 0.846 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.346 0.654 27 H 0.356 0.644 28 H 0.149 0.851 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 -14.730 0.005 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.211 4.211 3 Si 0.824 3.176 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.101 0.899 9 N -0.186 5.186 10 C 0.250 3.750 11 O -0.531 6.531 12 C -0.131 4.131 13 C -0.107 4.107 14 C -0.130 4.130 15 C -0.075 4.075 16 C -0.023 4.023 17 N -0.388 5.388 18 C -0.120 4.120 19 C -0.126 4.126 20 H 0.093 0.907 21 H 0.233 0.767 22 H 0.137 0.863 23 H 0.172 0.828 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.158 0.842 27 H 0.171 0.829 28 H 0.166 0.834 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.309 -13.870 -0.052 14.852 hybrid contribution 0.674 0.388 0.231 0.812 sum -4.635 -13.483 0.179 14.258 Atomic orbital electron populations 1.69652 1.07069 1.29947 1.48301 1.26231 0.96657 1.02784 0.95436 0.84758 0.77989 0.76200 0.78688 1.19628 1.19110 1.19098 1.19850 0.93083 0.83823 1.50191 0.89880 1.41913 1.09598 1.04763 1.62344 1.18632 0.87354 0.84812 0.84184 1.90525 1.15327 1.88079 1.59129 1.20098 0.94498 0.93255 1.05252 1.21239 1.00256 0.91443 0.97807 1.21209 0.93942 0.97548 1.00302 1.20251 0.93377 0.95936 0.97959 1.20699 0.99533 0.91395 0.90660 1.58640 1.28104 1.39051 1.13005 1.21171 1.00933 0.90778 0.99080 1.21435 0.92465 0.99648 0.99100 0.90682 0.76659 0.86317 0.82821 0.92651 0.89125 0.84165 0.82927 0.83372 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.52 13.05 21.68 0.28 -49.23 15 2 C -0.01 -0.53 5.50 84.96 0.47 -0.07 15 3 Si 1.00 43.07 29.55 68.60 2.03 45.10 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 7 C -0.34 -20.12 9.68 84.10 0.81 -19.30 15 8 H 0.08 5.21 7.15 -2.91 -0.02 5.19 15 9 N -0.55 -30.66 5.23 -309.72 -1.62 -32.28 15 10 C 0.46 24.85 7.72 86.75 0.67 25.52 15 11 O -0.64 -38.99 15.92 -4.00 -0.06 -39.05 15 12 C -0.13 -5.45 5.87 -20.09 -0.12 -5.56 15 13 C -0.09 -3.20 9.60 22.54 0.22 -2.98 15 14 C -0.11 -2.96 9.68 22.23 0.22 -2.74 15 15 C -0.07 -1.81 5.40 -19.80 -0.11 -1.91 15 16 C 0.11 1.75 6.90 85.56 0.59 2.34 15 17 N -0.86 -13.20 9.61 -190.02 -1.83 -15.03 15 18 C -0.10 -2.85 9.68 22.23 0.22 -2.63 15 19 C -0.11 -3.87 9.54 22.54 0.22 -3.66 15 20 H 0.28 14.18 8.31 -92.71 -0.77 13.41 15 21 H 0.40 20.86 5.93 -92.70 -0.55 20.31 15 22 H 0.12 4.52 7.65 -2.91 -0.02 4.50 15 23 H 0.15 2.93 8.06 -2.91 -0.02 2.90 15 24 H 0.06 0.72 8.09 -2.39 -0.02 0.70 15 25 H 0.09 1.33 8.08 -2.39 -0.02 1.32 15 26 H 0.35 5.14 8.99 -89.69 -0.81 4.33 15 27 H 0.36 3.68 9.08 -89.69 -0.81 2.87 15 28 H 0.15 3.38 8.06 -2.91 -0.02 3.35 15 29 H 0.12 4.42 6.40 -2.91 -0.02 4.40 15 Total: -1.00 -70.63 260.05 1.01 -69.62 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.97 Total: 31.86 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 3.18 Total: -11.00 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -3.16 Total: -96.53 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.06 Total: -39.05 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.63 1.01 -69.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040859956.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.257 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds