Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86806 * 119.99593 * 2 1 4 4 H 1.48497 * 109.46952 * 239.99917 * 3 2 1 5 5 H 1.48499 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46889 * 120.00279 * 3 2 1 7 7 C 1.38946 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99898 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00095 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99685 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.47343 * 319.99900 * 12 10 9 14 14 N 1.46905 * 109.47075 * 200.00059 * 12 10 9 15 15 C 1.50697 * 109.47094 * 80.00100 * 12 10 9 16 16 C 1.38237 * 119.99943 * 79.72637 * 15 12 10 17 17 C 1.38243 * 119.99926 * 179.78657 * 16 15 12 18 18 C 1.38235 * 119.99685 * 0.44284 * 17 16 15 19 19 C 1.38227 * 120.00062 * 359.80853 * 18 17 16 20 20 C 1.38236 * 120.00023 * 259.99659 * 15 12 10 21 21 H 0.96996 * 120.00480 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99592 * 0.02562 * 9 7 2 23 23 H 1.00901 * 110.99869 * 176.04968 * 14 12 10 24 24 H 1.00896 * 110.99543 * 300.00090 * 14 12 10 25 25 H 1.08001 * 120.00299 * 359.97438 * 16 15 12 26 26 H 1.08002 * 119.99987 * 180.26993 * 17 16 15 27 27 H 1.07998 * 119.99717 * 179.82895 * 18 17 16 28 28 H 1.08008 * 119.99659 * 179.97438 * 19 18 17 29 29 H 1.07994 * 119.99856 * 359.97438 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 1 0.3803 -4.7841 0.6591 14 7 2.1260 -5.9378 0.4727 15 6 0.7797 -5.1743 -1.4006 16 6 1.6615 -5.7165 -2.3167 17 6 1.2344 -6.0063 -3.5992 18 6 -0.0720 -5.7452 -3.9682 19 6 -0.9523 -5.1981 -3.0536 20 6 -0.5265 -4.9124 -1.7698 21 1 -0.4851 0.8400 -0.0004 22 1 0.3534 -2.3906 -0.0005 23 1 1.6260 -6.8114 0.5428 24 1 2.9348 -6.0309 -0.1233 25 1 2.6832 -5.9167 -2.0297 26 1 1.9222 -6.4340 -4.3137 27 1 -0.4049 -5.9690 -4.9709 28 1 -1.9729 -4.9938 -3.3420 29 1 -1.2143 -4.4851 -1.0552 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040859982.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = -14.762445 kcal Electronic energy + Delta-G solvation = -14451.864174 eV Core-core repulsion = 11953.474822 eV Total energy + Delta-G solvation = -2498.389351 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.50915 -37.80635 -34.49540 -33.66383 -31.25499 -30.70152 -29.84264 -26.24714 -24.09733 -22.32370 -21.42879 -19.04245 -17.85831 -16.83426 -16.57578 -15.20041 -14.77596 -14.73907 -14.08008 -13.96318 -13.67606 -13.16387 -12.94576 -12.77388 -12.26016 -11.62435 -11.51171 -11.13533 -10.98757 -10.77390 -10.42939 -10.20327 -9.49012 -9.13573 -8.72134 -8.31314 -8.07623 -7.95069 -6.40356 -3.80712 1.52725 1.60649 3.21334 3.26814 3.31518 3.82220 4.03534 4.18812 4.75662 5.01449 5.06787 5.16544 5.28514 5.32601 5.41452 5.64639 5.74086 5.89023 6.12925 6.24041 6.29279 6.64008 6.67935 6.78507 7.19111 7.40710 7.56267 7.79585 8.07031 8.61943 9.18505 9.55037 10.06294 10.77197 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.031347 B = 0.008364 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.999131 B = 3346.711774 C = 3765.689273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.556 5.556 10 C 0.454 3.546 11 O -0.584 6.584 12 C 0.119 3.881 13 H 0.096 0.904 14 N -0.819 5.819 15 C -0.104 4.104 16 C -0.110 4.110 17 C -0.121 4.121 18 C -0.127 4.127 19 C -0.119 4.119 20 C -0.106 4.106 21 H 0.272 0.728 22 H 0.392 0.608 23 H 0.337 0.663 24 H 0.348 0.652 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -10.144 -5.185 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.192 5.192 10 C 0.239 3.761 11 O -0.469 6.469 12 C 0.004 3.996 13 H 0.114 0.886 14 N -0.349 5.349 15 C -0.107 4.107 16 C -0.129 4.129 17 C -0.139 4.139 18 C -0.145 4.145 19 C -0.137 4.137 20 C -0.125 4.125 21 H 0.082 0.918 22 H 0.225 0.775 23 H 0.149 0.851 24 H 0.164 0.836 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.762 -9.518 -4.491 10.881 hybrid contribution -0.480 0.496 -1.025 1.235 sum -3.242 -9.022 -5.516 11.061 Atomic orbital electron populations 1.69601 1.05932 1.28276 1.50338 1.25255 0.95633 0.99691 0.97221 0.85918 0.78784 0.80433 0.79091 1.19925 1.20944 1.19832 1.19664 0.93356 0.82211 1.47681 0.87973 1.41798 1.09153 1.04459 1.63745 1.19455 0.88039 0.84217 0.84375 1.90497 1.13708 1.86762 1.55892 1.20290 0.95899 0.92923 0.90518 0.88579 1.58582 1.10466 1.07809 1.58026 1.20715 0.94139 0.98525 0.97318 1.20968 0.99229 0.99211 0.93480 1.21067 0.96033 1.00672 0.96114 1.21091 0.93975 1.00229 0.99250 1.21109 0.99657 0.99297 0.93631 1.21098 0.95505 0.99133 0.96758 0.91803 0.77478 0.85085 0.83623 0.86156 0.86331 0.86449 0.86166 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 13.05 55.50 0.72 -23.99 15 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.30 -8.53 9.68 -14.93 -0.14 -8.68 15 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 15 9 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 15 10 C 0.45 11.13 7.00 -10.98 -0.08 11.05 15 11 O -0.58 -16.29 15.83 5.55 0.09 -16.20 15 12 C 0.12 2.22 3.39 -70.01 -0.24 1.99 15 13 H 0.10 1.66 8.00 -51.93 -0.42 1.24 15 14 N -0.82 -13.67 8.81 -6.65 -0.06 -13.73 15 15 C -0.10 -1.76 4.93 -104.62 -0.52 -2.28 15 16 C -0.11 -1.77 9.29 -39.58 -0.37 -2.13 15 17 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 15 18 C -0.13 -1.69 10.05 -39.59 -0.40 -2.09 15 19 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 15 20 C -0.11 -1.66 9.67 -39.58 -0.38 -2.04 15 21 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 22 H 0.39 9.78 7.90 -40.82 -0.32 9.46 15 23 H 0.34 4.47 9.06 -39.29 -0.36 4.11 15 24 H 0.35 5.88 6.94 -39.29 -0.27 5.61 15 25 H 0.12 1.88 6.68 -52.49 -0.35 1.53 15 26 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.12 1.24 8.06 -52.49 -0.42 0.81 15 28 H 0.12 1.38 8.06 -52.48 -0.42 0.96 15 29 H 0.12 1.79 8.04 -52.49 -0.42 1.37 15 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -31.83 259.70 -6.35 -38.18 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -2.92 Total: 17.84 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.01 Total: -7.77 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.61 Total: -52.27 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.09 Total: -16.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.83 -6.35 -38.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040859982.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.417 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds