Wall clock time and date at job start Mon Mar 30 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46577 * 299.99706 * 3 2 1 6 6 H 1.48497 * 109.47142 * 59.99147 * 3 2 1 7 7 C 1.38956 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00156 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99483 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00330 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00147 * 179.97438 * 10 9 7 13 13 C 1.50689 * 109.47698 * 180.02562 * 12 10 9 14 14 C 1.38293 * 119.92619 * 90.00181 * 13 12 10 15 15 C 1.38103 * 120.07544 * 180.02562 * 14 13 12 16 16 C 1.38914 * 119.92585 * 0.02562 * 15 14 13 17 17 N 1.39671 * 120.07130 * 179.97438 * 16 15 14 18 18 C 1.38912 * 119.84788 * 0.25342 * 16 15 14 19 19 C 1.38098 * 119.92495 * 359.48977 * 18 16 15 20 20 H 0.96996 * 119.99804 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00134 * 0.02562 * 9 7 2 22 22 H 1.09007 * 109.46897 * 59.99704 * 12 10 9 23 23 H 1.09003 * 109.46911 * 300.01020 * 12 10 9 24 24 H 1.08001 * 119.95818 * 0.04180 * 14 13 12 25 25 H 1.07999 * 120.03416 * 179.97438 * 15 14 13 26 26 H 0.97001 * 120.00529 * 0.02562 * 17 16 15 27 27 H 0.97005 * 119.99745 * 179.72366 * 17 16 15 28 28 H 1.08005 * 120.03088 * 179.72680 * 18 16 15 29 29 H 1.08005 * 119.96252 * 180.25688 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 6 2.2231 -6.0084 0.0016 14 6 2.6714 -6.5323 1.2004 15 6 3.5692 -7.5816 1.2045 16 6 4.0224 -8.1106 0.0026 17 7 4.9308 -9.1715 0.0032 18 6 3.5745 -7.5781 -1.1997 19 6 2.6726 -6.5323 -1.1966 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3907 -0.0002 22 1 0.6168 -4.9209 -0.8886 23 1 0.6174 -4.9205 0.8913 24 1 2.3187 -6.1204 2.1344 25 1 3.9192 -7.9900 2.1410 26 1 5.2457 -9.5400 0.8434 27 1 5.2435 -9.5427 -0.8367 28 1 3.9283 -7.9842 -2.1359 29 1 2.3208 -6.1206 -2.1310 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040859997.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:19 Heat of formation + Delta-G solvation = -21.824147 kcal Electronic energy + Delta-G solvation = -13961.524045 eV Core-core repulsion = 11462.828476 eV Total energy + Delta-G solvation = -2498.695570 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.23857 -37.81455 -34.66114 -33.74460 -31.24469 -30.51766 -30.37397 -26.33539 -24.28751 -22.47987 -21.07186 -19.05729 -17.79981 -16.82864 -16.67410 -15.75726 -15.01747 -14.42615 -14.33079 -13.81796 -13.29173 -13.20186 -12.94880 -12.92843 -12.24091 -11.55786 -11.35180 -10.99876 -10.97284 -10.53610 -10.30499 -10.19362 -10.12878 -9.45786 -8.53384 -8.31014 -7.89842 -7.16051 -6.35859 -3.76333 1.83267 1.97963 3.19931 3.29910 3.37691 4.00241 4.00788 4.17253 4.30013 5.18617 5.23002 5.31453 5.32885 5.45654 5.79007 5.83320 6.04433 6.11074 6.23871 6.42830 6.46669 6.63298 6.80705 7.18884 7.21403 7.60937 7.69682 7.86425 8.13168 8.68662 9.24551 9.62465 10.14859 10.82027 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.063832 B = 0.005545 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.549074 B = 5048.535312 C = 5176.494189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.444 3.556 11 O -0.587 6.587 12 C -0.092 4.092 13 C -0.096 4.096 14 C -0.060 4.060 15 C -0.197 4.197 16 C 0.200 3.800 17 N -0.885 5.885 18 C -0.197 4.197 19 C -0.060 4.060 20 H 0.270 0.730 21 H 0.392 0.608 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.117 0.883 25 H 0.114 0.886 26 H 0.393 0.607 27 H 0.393 0.607 28 H 0.114 0.886 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 -14.350 0.000 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.471 6.471 12 C -0.132 4.132 13 C -0.099 4.099 14 C -0.079 4.079 15 C -0.220 4.220 16 C 0.098 3.902 17 N -0.425 5.425 18 C -0.219 4.219 19 C -0.079 4.079 20 H 0.080 0.920 21 H 0.226 0.774 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.135 0.865 25 H 0.132 0.868 26 H 0.221 0.779 27 H 0.221 0.779 28 H 0.132 0.868 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.240 -14.128 0.001 14.495 hybrid contribution 0.074 0.666 -0.001 0.670 sum 3.314 -13.461 0.000 13.863 Atomic orbital electron populations 1.69621 1.05895 1.27918 1.51046 1.25248 0.95623 0.99640 0.97549 0.85824 0.79722 0.81288 0.77655 1.19270 1.20803 1.20806 1.19764 0.93374 0.82363 1.47194 0.87978 1.41918 1.09187 1.04618 1.64645 1.19919 0.88340 0.84709 0.84018 1.90535 1.13928 1.87303 1.55347 1.20497 0.97122 0.92270 1.03314 1.19170 1.00526 0.97135 0.93034 1.20714 0.95343 0.94283 0.97532 1.20443 1.04057 1.01676 0.95785 1.17706 0.90067 0.88490 0.93969 1.42368 1.51457 1.38477 1.10231 1.20442 1.04015 1.01710 0.95782 1.20711 0.95302 0.94320 0.97540 0.92013 0.77430 0.89810 0.89814 0.86460 0.86826 0.77910 0.77912 0.86825 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.00 13.05 55.50 0.72 -24.28 15 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 15 3 Si 0.93 21.46 29.55 -169.99 -5.02 16.43 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 7 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 15 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 15 9 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 15 10 C 0.44 10.85 7.78 -10.99 -0.09 10.76 15 11 O -0.59 -16.56 15.61 5.55 0.09 -16.48 15 12 C -0.09 -1.69 5.83 -29.04 -0.17 -1.86 15 13 C -0.10 -1.73 4.38 -104.59 -0.46 -2.19 15 14 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 15 15 C -0.20 -2.94 9.90 -39.38 -0.39 -3.33 15 16 C 0.20 2.83 6.75 -83.79 -0.57 2.27 15 17 N -0.89 -8.94 9.09 32.41 0.29 -8.65 15 18 C -0.20 -2.94 9.90 -39.38 -0.39 -3.33 15 19 C -0.06 -1.01 9.69 -39.62 -0.38 -1.39 15 20 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.39 9.71 7.90 -40.82 -0.32 9.39 15 22 H 0.08 1.36 8.09 -51.92 -0.42 0.94 15 23 H 0.08 1.36 8.08 -51.93 -0.42 0.94 15 24 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.39 3.20 8.84 -40.82 -0.36 2.84 15 27 H 0.39 3.20 8.84 -40.82 -0.36 2.84 15 28 H 0.11 1.42 8.06 -52.48 -0.42 0.99 15 29 H 0.12 1.82 8.06 -52.48 -0.42 1.40 15 LS Contribution 262.45 15.07 3.95 3.95 Total: -1.00 -32.95 262.45 -6.17 -39.12 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -3.09 Total: 13.33 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.07 Total: -8.62 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.96 Total: -47.75 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.09 Total: -16.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.95 -6.17 -39.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040859997.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.300 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds