Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46899 * 269.97898 * 8 7 6 10 10 O 1.21433 * 120.00325 * 0.02562 * 9 8 7 11 11 C 1.41026 * 119.99876 * 180.02562 * 9 8 7 12 12 H 1.08002 * 119.99899 * 359.97438 * 11 9 8 13 13 C 1.40464 * 120.00308 * 179.97438 * 11 9 8 14 14 N 1.30523 * 119.99693 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00151 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46660 * 90.00447 * 15 13 11 17 17 H 1.48499 * 109.47111 * 210.00157 * 15 13 11 18 18 H 1.48495 * 109.47077 * 330.00704 * 15 13 11 19 19 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 20 20 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 21 21 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 23 23 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 24 24 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 25 25 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 26 26 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 27 27 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 28 28 H 0.97003 * 119.99424 * 179.97438 * 14 13 11 29 29 H 1.08006 * 120.02917 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 6 6.0624 2.6249 -1.4206 10 8 5.2745 2.5827 -2.3436 11 6 7.4469 2.6989 -1.6782 12 1 8.1477 2.7369 -0.8573 13 6 7.9146 2.7232 -3.0025 14 7 7.0677 2.6778 -3.9946 15 14 9.7486 2.8219 -3.3437 16 1 10.3099 1.4500 -3.4332 17 1 9.9757 3.5344 -4.6267 18 1 10.4179 3.5597 -2.2425 19 6 3.4311 1.2849 -0.0001 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2128 2.3203 -0.0106 24 1 1.3339 4.5114 0.0011 25 1 3.7922 4.6381 0.0002 26 1 5.8756 3.5067 0.5138 27 1 5.9714 1.7293 0.5143 28 1 7.3907 2.6949 -4.9091 29 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041204419.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = -61.505216 kcal Electronic energy + Delta-G solvation = -14182.536106 eV Core-core repulsion = 11649.827085 eV Total energy + Delta-G solvation = -2532.709021 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.68103 -37.55685 -36.17002 -32.68633 -31.54495 -29.99978 -27.84749 -27.02433 -25.52216 -22.03716 -21.13514 -19.29261 -17.17161 -16.21936 -15.83619 -15.47340 -15.46476 -15.10910 -13.86488 -13.59507 -13.44327 -12.90549 -12.41868 -12.32337 -12.07730 -11.66717 -11.36101 -11.16244 -10.89256 -10.71916 -10.43980 -10.24544 -10.21613 -10.09777 -8.88261 -8.25034 -7.69952 -7.29923 -6.18624 -4.85828 1.93068 2.01689 3.07429 3.15919 3.19445 3.58396 4.05642 4.28679 4.35707 5.11250 5.25172 5.30860 5.34991 5.47300 5.53925 5.68643 5.92992 5.98714 6.15056 6.43952 6.57016 6.67816 6.73291 6.83478 6.95014 7.26145 7.29559 7.39136 7.83395 8.11719 8.86945 8.92888 10.39316 10.62721 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.051600 B = 0.006395 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.501451 B = 4377.709363 C = 4542.587149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.226 4.226 5 C -0.085 4.085 6 C -0.148 4.148 7 C 0.006 3.994 8 C -0.133 4.133 9 C 0.368 3.632 10 O -0.535 6.535 11 C -0.538 4.538 12 H 0.069 0.931 13 C 0.083 3.917 14 N -0.741 5.741 15 Si 0.905 3.095 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.143 4.143 20 H 0.052 0.948 21 H 0.094 0.906 22 H 0.050 0.950 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.272 0.728 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 -1.054 7.436 10.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.245 4.245 5 C -0.103 4.103 6 C -0.166 4.166 7 C 0.006 3.994 8 C -0.171 4.171 9 C 0.261 3.739 10 O -0.422 6.422 11 C -0.570 4.570 12 H 0.087 0.913 13 C -0.140 4.140 14 N -0.370 5.370 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.161 4.161 20 H 0.071 0.929 21 H 0.112 0.888 22 H 0.069 0.931 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.136 0.864 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.275 -1.269 6.827 10.802 hybrid contribution 0.711 0.206 -0.137 0.753 sum -7.564 -1.062 6.690 10.153 Atomic orbital electron populations 1.22945 0.79294 1.03214 1.01021 1.86048 1.20678 1.27555 1.89254 1.18939 0.92269 0.83694 0.97483 1.20977 0.99095 0.92575 1.11828 1.20776 0.94575 0.96486 0.98443 1.20892 0.93438 0.98198 1.04075 1.19611 0.96174 0.91735 0.91903 1.21379 0.89810 1.02194 1.03694 1.19372 0.89710 0.78627 0.86146 1.90436 1.58296 1.47973 1.45530 1.20777 0.94219 1.49358 0.92617 0.91268 1.26006 0.99283 0.92588 0.96123 1.69967 1.35597 1.31708 0.99695 0.86413 0.83060 0.79114 0.78527 1.19488 1.20290 1.18620 1.20229 0.90873 0.98426 1.06619 0.92941 0.88794 0.93104 0.86391 0.86531 0.86412 0.90515 0.90595 0.91690 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 15 2 O -0.32 -5.45 10.50 -19.44 -0.20 -5.66 15 3 C 0.12 2.27 6.69 -39.22 -0.26 2.01 15 4 C -0.23 -3.81 9.04 -39.43 -0.36 -4.17 15 5 C -0.08 -1.46 10.04 -39.60 -0.40 -1.85 15 6 C -0.15 -2.91 9.70 -39.56 -0.38 -3.29 15 7 C 0.01 0.13 4.37 -104.65 -0.46 -0.33 15 8 C -0.13 -2.96 5.70 -29.04 -0.17 -3.13 15 9 C 0.37 10.37 6.90 -33.25 -0.23 10.14 15 10 O -0.53 -17.13 14.56 5.42 0.08 -17.05 15 11 C -0.54 -15.00 9.22 -37.69 -0.35 -15.35 15 12 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 13 C 0.08 2.27 5.50 -17.27 -0.10 2.18 15 14 N -0.74 -21.79 11.72 55.57 0.65 -21.14 15 15 Si 0.90 19.64 29.56 -169.99 -5.03 14.61 15 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 17 H -0.28 -5.89 7.11 56.52 0.40 -5.48 15 18 H -0.26 -5.51 7.11 56.52 0.40 -5.10 15 19 C -0.14 -2.98 9.64 -39.44 -0.38 -3.37 15 20 H 0.05 0.58 7.65 -51.93 -0.40 0.18 15 21 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.51 7.67 -51.93 -0.40 0.11 15 23 H 0.12 1.60 6.30 -52.49 -0.33 1.27 15 24 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 25 H 0.12 2.17 8.06 -52.49 -0.42 1.75 15 26 H 0.08 1.55 8.08 -51.93 -0.42 1.13 15 27 H 0.08 1.55 8.08 -51.93 -0.42 1.13 15 28 H 0.27 7.20 8.29 -40.82 -0.34 6.86 15 29 H 0.12 2.53 8.06 -52.48 -0.42 2.11 15 LS Contribution 260.52 15.07 3.93 3.93 Total: -1.00 -33.67 260.52 -5.86 -39.53 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.20 Total: 1.60 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.08 Total: -15.81 kcal Atomic # 7 Polarization: -21.79 SS G_CDS: 0.65 Total: -21.14 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.13 Total: -22.71 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.67 -5.86 -39.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041204419.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.979 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds