Wall clock time and date at job start Mon Mar 30 2020 02:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46899 * 269.97898 * 8 7 6 10 10 O 1.21433 * 120.00325 * 0.02562 * 9 8 7 11 11 C 1.41026 * 119.99876 * 180.02562 * 9 8 7 12 12 H 1.08002 * 119.99899 * 359.97438 * 11 9 8 13 13 C 1.40464 * 120.00308 * 179.97438 * 11 9 8 14 14 N 1.30523 * 119.99693 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00151 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46660 * 90.00447 * 15 13 11 17 17 H 1.48499 * 109.47111 * 210.00157 * 15 13 11 18 18 H 1.48495 * 109.47077 * 330.00704 * 15 13 11 19 19 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 20 20 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 21 21 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 23 23 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 24 24 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 25 25 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 26 26 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 27 27 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 28 28 H 0.97003 * 119.99424 * 179.97438 * 14 13 11 29 29 H 1.08006 * 120.02917 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 6 6.0624 2.6249 -1.4206 10 8 5.2745 2.5827 -2.3436 11 6 7.4469 2.6989 -1.6782 12 1 8.1477 2.7369 -0.8573 13 6 7.9146 2.7232 -3.0025 14 7 7.0677 2.6778 -3.9946 15 14 9.7486 2.8219 -3.3437 16 1 10.3099 1.4500 -3.4332 17 1 9.9757 3.5344 -4.6267 18 1 10.4179 3.5597 -2.2425 19 6 3.4311 1.2849 -0.0001 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2128 2.3203 -0.0106 24 1 1.3339 4.5114 0.0011 25 1 3.7922 4.6381 0.0002 26 1 5.8756 3.5067 0.5138 27 1 5.9714 1.7293 0.5143 28 1 7.3907 2.6949 -4.9091 29 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041204419.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:45 Heat of formation + Delta-G solvation = -83.441540 kcal Electronic energy + Delta-G solvation = -14183.487336 eV Core-core repulsion = 11649.827085 eV Total energy + Delta-G solvation = -2533.660251 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.05031 -39.25737 -37.94052 -34.77341 -33.20974 -31.39234 -29.75758 -28.18565 -27.28213 -23.48170 -22.75955 -21.09558 -18.56084 -18.35589 -17.16634 -17.11105 -16.88810 -16.58693 -15.44296 -15.32125 -15.03864 -14.53869 -14.13940 -14.00551 -13.45649 -13.21971 -12.90930 -12.73133 -12.40660 -12.38968 -12.14921 -12.02170 -11.87028 -11.63163 -10.95714 -9.83105 -9.42526 -9.07883 -8.25941 -7.07392 0.47080 0.56190 1.36288 1.38444 1.55236 2.22023 2.22499 2.40602 2.88090 3.40372 3.91866 3.96235 4.21267 4.33775 4.41245 4.49745 4.53067 4.63968 4.68531 4.72105 4.88985 4.98331 5.17395 5.21653 5.36620 5.51470 5.80159 5.90355 5.99652 6.52325 6.74318 6.83537 8.30697 8.54225 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.051600 B = 0.006395 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.501451 B = 4377.709363 C = 4542.587149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.116 3.884 4 C -0.219 4.219 5 C -0.079 4.079 6 C -0.169 4.169 7 C -0.020 4.020 8 C -0.122 4.122 9 C 0.345 3.655 10 O -0.585 6.585 11 C -0.567 4.567 12 H 0.088 0.912 13 C 0.025 3.975 14 N -0.792 5.792 15 Si 0.994 3.006 16 H -0.260 1.260 17 H -0.269 1.269 18 H -0.247 1.247 19 C -0.174 4.174 20 H 0.060 0.940 21 H 0.120 0.880 22 H 0.071 0.929 23 H 0.158 0.842 24 H 0.156 0.844 25 H 0.122 0.878 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.280 0.720 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.245 -0.619 8.120 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.071 3.929 4 C -0.238 4.238 5 C -0.096 4.096 6 C -0.187 4.187 7 C -0.020 4.020 8 C -0.160 4.160 9 C 0.243 3.757 10 O -0.477 6.477 11 C -0.598 4.598 12 H 0.106 0.894 13 C -0.193 4.193 14 N -0.421 5.421 15 Si 0.813 3.187 16 H -0.185 1.185 17 H -0.194 1.194 18 H -0.170 1.170 19 C -0.193 4.193 20 H 0.078 0.922 21 H 0.138 0.862 22 H 0.089 0.911 23 H 0.175 0.825 24 H 0.173 0.827 25 H 0.140 0.860 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.641 -0.839 7.545 11.502 hybrid contribution 0.684 0.020 -0.330 0.759 sum -7.957 -0.819 7.215 10.772 Atomic orbital electron populations 1.23354 0.76342 1.05571 1.02311 1.86027 1.23726 1.26857 1.88941 1.19051 0.91822 0.85212 0.96813 1.21416 1.00987 0.91541 1.09829 1.21226 0.93767 0.98282 0.96361 1.21115 0.94919 0.97739 1.04955 1.19629 0.95674 0.92844 0.93889 1.21144 0.91145 1.03551 1.00156 1.20123 0.90030 0.77443 0.88146 1.90385 1.59382 1.50207 1.47731 1.21352 0.94950 1.49509 0.94019 0.89402 1.27260 1.05493 0.91121 0.95439 1.70112 1.38888 1.32534 1.00597 0.85071 0.75065 0.79670 0.78894 1.18455 1.19402 1.16997 1.20297 0.92447 0.97888 1.08659 0.92173 0.86166 0.91082 0.82494 0.82675 0.85961 0.88685 0.89484 0.90985 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 15 2 O -0.34 -11.23 10.50 -92.48 -0.97 -12.20 15 3 C 0.12 4.31 6.69 22.50 0.15 4.46 15 4 C -0.22 -6.86 9.04 22.37 0.20 -6.66 15 5 C -0.08 -2.53 10.04 22.26 0.22 -2.31 15 6 C -0.17 -6.62 9.70 22.28 0.22 -6.40 15 7 C -0.02 -0.89 4.37 -19.88 -0.09 -0.98 15 8 C -0.12 -5.61 5.70 29.10 0.17 -5.44 15 9 C 0.35 20.14 6.90 26.37 0.18 20.32 15 10 O -0.58 -39.17 14.56 -3.51 -0.05 -39.22 15 11 C -0.57 -32.15 9.22 23.50 0.22 -31.93 15 12 H 0.09 4.47 7.85 -2.91 -0.02 4.45 15 13 C 0.03 1.40 5.50 85.43 0.47 1.88 15 14 N -0.79 -47.84 11.72 21.91 0.26 -47.58 15 15 Si 0.99 40.09 29.56 68.60 2.03 42.12 15 16 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 17 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 18 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 19 C -0.17 -7.51 9.64 22.36 0.22 -7.29 15 20 H 0.06 1.14 7.65 -2.39 -0.02 1.12 15 21 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.07 1.17 7.67 -2.39 -0.02 1.15 15 23 H 0.16 3.59 6.30 -2.91 -0.02 3.57 15 24 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 25 H 0.12 4.51 8.06 -2.91 -0.02 4.48 15 26 H 0.09 3.89 8.08 -2.39 -0.02 3.87 15 27 H 0.09 3.68 8.08 -2.39 -0.02 3.66 15 28 H 0.28 15.15 8.29 -92.71 -0.77 14.38 15 29 H 0.11 4.83 8.06 -2.91 -0.02 4.81 15 Total: -1.00 -75.83 260.52 5.48 -70.35 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 1.15 Total: 19.40 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.07 Total: -32.88 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.26 Total: -47.58 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -1.02 Total: -51.42 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -75.83 5.48 -70.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041204419.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.090 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds