Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47556 * 240.00379 * 3 2 1 5 5 H 1.48495 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46994 * 120.00789 * 3 2 1 7 7 C 1.37881 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47113 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99771 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00157 * 179.97438 * 10 9 7 13 13 C 1.46503 * 120.00355 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47313 * 180.02562 * 13 12 10 15 15 C 1.38678 * 120.41675 * 270.25293 * 14 13 12 16 16 C 1.38627 * 118.41930 * 180.24221 * 15 14 13 17 17 C 1.38232 * 119.16085 * 359.75178 * 16 15 14 18 18 N 1.31857 * 120.76541 * 359.97438 * 17 16 15 19 19 C 1.31889 * 121.72235 * 0.02562 * 18 17 16 20 20 H 0.96998 * 119.99551 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47162 * 59.99512 * 9 7 2 22 22 H 1.09000 * 109.46806 * 299.99918 * 9 7 2 23 23 H 0.97000 * 119.99935 * 359.97438 * 12 10 9 24 24 H 1.09001 * 109.46632 * 59.99997 * 13 12 10 25 25 H 1.08996 * 109.46728 * 299.99991 * 13 12 10 26 26 H 1.07994 * 120.78944 * 359.96926 * 15 14 13 27 27 H 1.07997 * 120.42083 * 179.72800 * 16 15 14 28 28 H 1.07999 * 119.61954 * 180.02562 * 17 16 15 29 29 H 1.08002 * 119.61237 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6961 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2301 -3.6447 -0.0027 11 8 3.4226 -3.4231 -0.0030 12 7 1.7809 -4.9153 -0.0033 13 6 2.7328 -6.0290 -0.0038 14 6 1.9793 -7.3340 -0.0051 15 6 1.6231 -7.9403 1.1902 16 6 0.9350 -9.1427 1.1408 17 6 0.6244 -9.6908 -0.0896 18 7 0.9744 -9.0834 -1.2064 19 6 1.6295 -7.9387 -1.1972 20 1 -0.4849 0.8401 0.0004 21 1 0.6245 -2.5563 -0.8919 22 1 0.6239 -2.5575 0.8880 23 1 0.8272 -5.0926 -0.0027 24 1 3.3594 -5.9716 0.8863 25 1 3.3595 -5.9708 -0.8937 26 1 1.8796 -7.4887 2.1371 27 1 0.6456 -9.6450 2.0519 28 1 0.0882 -10.6271 -0.1368 29 1 1.8996 -7.4710 -2.1325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806392.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = -12.679367 kcal Electronic energy + Delta-G solvation = -13759.420545 eV Core-core repulsion = 11261.121523 eV Total energy + Delta-G solvation = -2498.299022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.36657 -38.57130 -34.82426 -32.92666 -32.42703 -31.44659 -28.99707 -26.26251 -23.71653 -23.45123 -21.88946 -19.72173 -17.31492 -16.54432 -16.40225 -16.23948 -15.23334 -14.86217 -14.41163 -14.31623 -13.86057 -13.28592 -13.19118 -12.66335 -12.59453 -12.08268 -11.65495 -11.14200 -10.80837 -10.59829 -10.04656 -9.96569 -9.62998 -9.36014 -9.29230 -8.61003 -8.55186 -8.41448 -6.05971 -4.05709 0.87514 1.09797 3.37397 3.39527 3.44507 3.54832 3.68296 4.08039 4.27687 4.49766 4.63246 4.66361 4.83136 4.86768 5.26812 5.32270 5.48327 5.69503 5.77661 5.91687 6.16250 6.32454 6.51029 6.95805 7.17507 7.31914 7.78601 7.95179 8.03152 8.40953 9.04795 9.18993 9.59315 11.06392 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.066509 B = 0.004947 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.893639 B = 5658.672049 C = 5781.242293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.515 3.485 11 O -0.545 6.545 12 N -0.746 5.746 13 C 0.164 3.836 14 C -0.149 4.149 15 C -0.059 4.059 16 C -0.175 4.175 17 C 0.097 3.903 18 N -0.487 5.487 19 C 0.115 3.885 20 H 0.262 0.738 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.397 0.603 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.155 0.845 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 -17.293 1.773 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.033 4.033 10 C 0.305 3.695 11 O -0.421 6.421 12 N -0.401 5.401 13 C 0.039 3.961 14 C -0.152 4.152 15 C -0.085 4.085 16 C -0.195 4.195 17 C -0.060 4.060 18 N -0.195 5.195 19 C -0.042 4.042 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.230 0.770 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.155 0.845 27 H 0.153 0.847 28 H 0.172 0.828 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.378 -17.366 0.966 17.397 hybrid contribution 0.066 1.075 0.893 1.399 sum 0.444 -16.291 1.859 16.403 Atomic orbital electron populations 1.69951 1.06051 1.27040 1.51042 1.25014 0.94918 0.99503 0.95195 0.86472 0.79367 0.82237 0.78867 1.20101 1.21362 1.20130 1.21131 0.94231 0.89123 1.50297 0.90720 1.19238 0.94133 0.90455 0.99510 1.22063 0.91140 0.83223 0.73045 1.90542 1.18020 1.84557 1.48949 1.46405 1.09413 1.05480 1.78820 1.19981 0.91302 0.81864 1.02938 1.21065 1.01261 0.98356 0.94492 1.21614 0.94299 0.94144 0.98482 1.22162 1.00625 0.97000 0.99704 1.22810 0.96228 0.99109 0.87882 1.67744 1.11087 1.09254 1.31445 1.22795 0.92845 0.90772 0.97781 0.92835 0.93409 0.93456 0.76999 0.91060 0.90883 0.84547 0.84699 0.82821 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 15 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 15 3 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 15 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 7 C -0.51 -14.80 8.92 -34.44 -0.31 -15.10 15 8 H 0.07 2.25 6.75 -52.49 -0.35 1.90 15 9 C 0.01 0.15 5.46 -29.03 -0.16 -0.01 15 10 C 0.52 11.56 7.82 -10.99 -0.09 11.47 15 11 O -0.54 -14.02 15.46 5.55 0.09 -13.94 15 12 N -0.75 -12.50 5.55 -61.47 -0.34 -12.84 15 13 C 0.16 2.30 5.82 -5.19 -0.03 2.27 15 14 C -0.15 -1.75 5.27 -104.48 -0.55 -2.30 15 15 C -0.06 -0.60 9.86 -39.28 -0.39 -0.99 15 16 C -0.18 -1.55 10.11 -39.44 -0.40 -1.95 15 17 C 0.10 0.94 11.18 -17.54 -0.20 0.75 15 18 N -0.49 -5.92 10.36 -13.25 -0.14 -6.05 15 19 C 0.12 1.37 10.86 -17.55 -0.19 1.18 15 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 22 H 0.05 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.40 5.86 8.46 -40.82 -0.35 5.51 15 24 H 0.07 1.02 8.10 -51.93 -0.42 0.60 15 25 H 0.07 1.05 8.09 -51.93 -0.42 0.63 15 26 H 0.14 1.22 8.06 -52.49 -0.42 0.80 15 27 H 0.14 0.82 8.06 -52.49 -0.42 0.40 15 28 H 0.15 1.05 8.06 -52.49 -0.42 0.63 15 29 H 0.16 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 264.51 15.07 3.99 3.99 Total: -1.00 -33.18 264.51 -6.31 -39.48 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.21 Total: 1.17 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.40 Total: -3.22 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.26 Total: -44.64 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.18 -6.31 -39.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806392.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.803 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds