Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47556 * 240.00379 * 3 2 1 5 5 H 1.48495 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46994 * 120.00789 * 3 2 1 7 7 C 1.37881 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47113 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99771 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00157 * 179.97438 * 10 9 7 13 13 C 1.46503 * 120.00355 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47313 * 180.02562 * 13 12 10 15 15 C 1.38678 * 120.41675 * 270.25293 * 14 13 12 16 16 C 1.38627 * 118.41930 * 180.24221 * 15 14 13 17 17 C 1.38232 * 119.16085 * 359.75178 * 16 15 14 18 18 N 1.31857 * 120.76541 * 359.97438 * 17 16 15 19 19 C 1.31889 * 121.72235 * 0.02562 * 18 17 16 20 20 H 0.96998 * 119.99551 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47162 * 59.99512 * 9 7 2 22 22 H 1.09000 * 109.46806 * 299.99918 * 9 7 2 23 23 H 0.97000 * 119.99935 * 359.97438 * 12 10 9 24 24 H 1.09001 * 109.46632 * 59.99997 * 13 12 10 25 25 H 1.08996 * 109.46728 * 299.99991 * 13 12 10 26 26 H 1.07994 * 120.78944 * 359.96926 * 15 14 13 27 27 H 1.07997 * 120.42083 * 179.72800 * 16 15 14 28 28 H 1.07999 * 119.61954 * 180.02562 * 17 16 15 29 29 H 1.08002 * 119.61237 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6961 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2301 -3.6447 -0.0027 11 8 3.4226 -3.4231 -0.0030 12 7 1.7809 -4.9153 -0.0033 13 6 2.7328 -6.0290 -0.0038 14 6 1.9793 -7.3340 -0.0051 15 6 1.6231 -7.9403 1.1902 16 6 0.9350 -9.1427 1.1408 17 6 0.6244 -9.6908 -0.0896 18 7 0.9744 -9.0834 -1.2064 19 6 1.6295 -7.9387 -1.1972 20 1 -0.4849 0.8401 0.0004 21 1 0.6245 -2.5563 -0.8919 22 1 0.6239 -2.5575 0.8880 23 1 0.8272 -5.0926 -0.0027 24 1 3.3594 -5.9716 0.8863 25 1 3.3595 -5.9708 -0.8937 26 1 1.8796 -7.4887 2.1371 27 1 0.6456 -9.6450 2.0519 28 1 0.0882 -10.6271 -0.1368 29 1 1.8996 -7.4710 -2.1325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806392.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = -36.191835 kcal Electronic energy + Delta-G solvation = -13760.440123 eV Core-core repulsion = 11261.121523 eV Total energy + Delta-G solvation = -2499.318599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.26643 -40.24332 -36.19074 -35.09168 -33.40082 -32.51785 -30.91634 -27.57846 -25.34848 -24.52441 -22.90133 -21.42119 -18.54683 -18.21884 -17.68052 -17.42519 -16.88674 -16.39035 -16.06072 -15.62529 -14.81491 -14.52233 -14.22841 -14.11337 -14.01787 -13.90618 -13.11847 -12.82137 -12.57244 -12.48172 -12.03003 -11.46948 -10.96934 -10.62861 -10.60121 -10.44084 -10.02879 -9.98246 -8.25228 -6.32698 0.04554 0.30264 1.40808 1.43570 1.52257 1.87255 2.33612 2.50430 2.95277 3.10218 3.44738 3.72211 3.88647 4.02719 4.08063 4.34270 4.50382 4.67278 4.75535 4.85160 5.07984 5.16328 5.25589 5.30349 5.49585 5.72690 5.74523 6.04993 6.67165 6.82738 6.98595 7.33201 7.48601 8.86740 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.066509 B = 0.004947 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.893639 B = 5658.672049 C = 5781.242293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.056 0.944 9 C 0.008 3.992 10 C 0.520 3.480 11 O -0.583 6.583 12 N -0.723 5.723 13 C 0.168 3.832 14 C -0.158 4.158 15 C -0.062 4.062 16 C -0.166 4.166 17 C 0.094 3.906 18 N -0.512 5.512 19 C 0.105 3.895 20 H 0.267 0.733 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.408 0.592 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.169 0.831 28 H 0.184 0.816 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -18.365 2.483 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.075 0.925 9 C -0.032 4.032 10 C 0.310 3.690 11 O -0.462 6.462 12 N -0.377 5.377 13 C 0.044 3.956 14 C -0.160 4.160 15 C -0.089 4.089 16 C -0.185 4.185 17 C -0.063 4.063 18 N -0.221 5.221 19 C -0.052 4.052 20 H 0.076 0.924 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.244 0.756 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.167 0.833 27 H 0.186 0.814 28 H 0.200 0.800 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.018 -18.486 1.674 18.562 hybrid contribution 0.112 1.268 0.695 1.450 sum 0.094 -17.218 2.369 17.381 Atomic orbital electron populations 1.70028 1.07174 1.28171 1.51133 1.25807 0.95856 1.02807 0.94479 0.85500 0.78341 0.78251 0.78945 1.19745 1.19942 1.19674 1.21364 0.93749 0.91265 1.51264 0.92540 1.19079 0.94318 0.90940 0.98851 1.21435 0.89833 0.84460 0.73296 1.90520 1.19088 1.85443 1.51162 1.46085 1.10639 1.04516 1.76415 1.20028 0.90886 0.81882 1.02782 1.20784 1.02426 0.97470 0.95368 1.21866 0.93986 0.94682 0.98338 1.22505 0.99113 0.96149 1.00736 1.23397 0.95458 0.99805 0.87623 1.67773 1.11902 1.09531 1.32918 1.22851 0.93210 0.91130 0.97993 0.92385 0.94073 0.93949 0.75607 0.91032 0.91253 0.83266 0.81358 0.79950 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.10 15 2 C 0.01 0.52 5.46 84.66 0.46 0.99 15 3 Si 0.97 45.39 29.54 68.60 2.03 47.42 15 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 7 C -0.54 -31.83 8.92 25.60 0.23 -31.60 15 8 H 0.06 3.49 6.75 -2.91 -0.02 3.47 15 9 C 0.01 0.39 5.46 29.10 0.16 0.55 15 10 C 0.52 23.64 7.82 87.66 0.69 24.32 15 11 O -0.58 -30.54 15.46 -3.05 -0.05 -30.59 15 12 N -0.72 -23.96 5.55 -466.79 -2.59 -26.55 15 13 C 0.17 4.62 5.82 85.63 0.50 5.12 15 14 C -0.16 -3.50 5.27 -19.77 -0.10 -3.60 15 15 C -0.06 -1.12 9.86 22.47 0.22 -0.90 15 16 C -0.17 -2.37 10.11 22.36 0.23 -2.14 15 17 C 0.09 1.56 11.18 84.69 0.95 2.51 15 18 N -0.51 -11.64 10.36 -195.83 -2.03 -13.66 15 19 C 0.10 2.39 10.86 84.67 0.92 3.31 15 20 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 21 H 0.04 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.04 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.41 11.74 8.46 -92.71 -0.78 10.96 15 24 H 0.07 2.00 8.10 -2.39 -0.02 1.98 15 25 H 0.07 1.99 8.09 -2.39 -0.02 1.97 15 26 H 0.15 2.27 8.06 -2.91 -0.02 2.24 15 27 H 0.17 1.27 8.06 -2.91 -0.02 1.25 15 28 H 0.18 1.84 8.06 -2.91 -0.02 1.82 15 29 H 0.16 3.37 8.06 -2.91 -0.02 3.34 15 Total: -1.00 -71.08 264.51 2.26 -68.82 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.37 Total: 10.11 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 4.24 Total: -1.44 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -4.33 Total: -94.32 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.08 2.26 -68.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806392.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.625 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds