Wall clock time and date at job start Mon Mar 30 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21298 * 120.00118 * 2 1 4 4 C 1.46864 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.40036 * 120.11344 * 0.26777 * 4 2 1 6 6 C 1.37117 * 119.88334 * 180.23019 * 5 4 2 7 7 C 1.39080 * 120.11437 * 359.52048 * 6 5 4 8 8 O 1.35661 * 119.88619 * 180.25876 * 7 6 5 9 9 C 1.42909 * 116.99973 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.46785 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00249 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99954 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00528 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99779 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47225 * 89.99748 * 14 12 10 16 16 H 1.48508 * 109.46982 * 209.99614 * 14 12 10 17 17 H 1.48494 * 109.47018 * 329.99336 * 14 12 10 18 18 C 1.39087 * 120.22860 * 0.22946 * 7 6 5 19 19 C 1.37108 * 120.11543 * 0.02562 * 18 7 6 20 20 H 1.09008 * 109.46764 * 269.99673 * 1 2 3 21 21 H 1.08998 * 109.47344 * 29.99681 * 1 2 3 22 22 H 1.08995 * 109.47239 * 150.00126 * 1 2 3 23 23 H 1.08004 * 120.06199 * 0.03238 * 5 4 2 24 24 H 1.08002 * 119.94651 * 179.80050 * 6 5 4 25 25 H 1.08996 * 109.46968 * 299.99427 * 9 8 7 26 26 H 1.08994 * 109.47008 * 59.99466 * 9 8 7 27 27 H 0.96994 * 120.00324 * 180.02562 * 13 12 10 28 28 H 1.07999 * 119.93759 * 180.02562 * 18 7 6 29 29 H 1.08004 * 120.05991 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5435 -2.4860 -0.0068 6 6 2.2338 -3.6707 -0.0025 7 6 3.6246 -3.6680 -0.0021 8 8 4.3029 -4.8428 -0.0032 9 6 5.7300 -4.7681 -0.0021 10 6 6.3059 -6.1606 -0.0029 11 1 5.6480 -7.0171 -0.0037 12 6 7.6728 -6.3414 -0.0026 13 7 8.1755 -7.5567 -0.0038 14 14 8.8107 -4.8599 -0.0006 15 1 9.1117 -4.4689 1.4000 16 1 10.0741 -5.2053 -0.7005 17 1 8.1510 -3.7281 -0.6997 18 6 4.3224 -2.4649 -0.0012 19 6 3.6417 -1.2747 -0.0002 20 1 -0.3633 -0.0001 1.0278 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 0.4635 -2.4893 -0.0117 24 1 1.6966 -4.6077 -0.0040 25 1 6.0665 -4.2349 -0.8912 26 1 6.0653 -4.2370 0.8887 27 1 9.1371 -7.6838 -0.0033 28 1 5.4024 -2.4682 -0.0013 29 1 4.1845 -0.3410 0.0001 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057835663.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:28 Heat of formation + Delta-G solvation = -77.308627 kcal Electronic energy + Delta-G solvation = -13894.316927 eV Core-core repulsion = 11360.922619 eV Total energy + Delta-G solvation = -2533.394308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.32451 -40.14459 -38.03875 -35.04707 -32.66936 -32.18377 -30.53589 -29.50251 -25.30946 -24.09431 -23.01194 -20.76371 -19.66856 -18.66306 -17.56346 -17.15360 -16.73346 -16.33591 -15.89956 -15.64013 -15.40668 -14.83006 -14.53136 -14.03046 -13.81287 -13.63291 -13.11755 -13.01500 -12.94706 -12.82509 -12.09811 -11.98919 -11.86086 -11.47076 -10.94681 -10.74467 -10.14694 -9.23842 -8.47147 -6.58336 -0.27672 0.34803 1.29453 1.31087 1.41010 1.45642 2.20563 2.41856 2.78973 2.85372 3.20803 3.73981 3.83370 4.17350 4.21281 4.32443 4.43083 4.54607 4.70382 4.71120 4.78530 4.95054 5.08843 5.15718 5.26017 5.37848 5.42306 5.65903 5.93904 6.45924 6.60684 6.62096 7.05394 8.69015 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.055399 B = 0.005940 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.301138 B = 4712.655167 C = 5197.509437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.402 3.598 3 O -0.515 6.515 4 C -0.239 4.239 5 C -0.009 4.009 6 C -0.180 4.180 7 C 0.147 3.853 8 O -0.323 6.323 9 C 0.178 3.822 10 C -0.556 4.556 11 H 0.040 0.960 12 C 0.023 3.977 13 N -0.932 5.932 14 Si 0.947 3.053 15 H -0.257 1.257 16 H -0.269 1.269 17 H -0.245 1.245 18 C -0.242 4.242 19 C -0.027 4.027 20 H 0.117 0.883 21 H 0.091 0.909 22 H 0.113 0.887 23 H 0.187 0.813 24 H 0.150 0.850 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.277 0.723 28 H 0.126 0.874 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.364 13.997 0.072 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.285 3.715 3 O -0.395 6.395 4 C -0.240 4.240 5 C -0.027 4.027 6 C -0.198 4.198 7 C 0.099 3.901 8 O -0.235 6.235 9 C 0.105 3.895 10 C -0.593 4.593 11 H 0.058 0.942 12 C -0.177 4.177 13 N -0.570 5.570 14 Si 0.768 3.232 15 H -0.182 1.182 16 H -0.194 1.194 17 H -0.169 1.169 18 C -0.261 4.261 19 C -0.045 4.045 20 H 0.135 0.865 21 H 0.109 0.891 22 H 0.131 0.869 23 H 0.204 0.796 24 H 0.168 0.832 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.952 14.199 0.066 19.907 hybrid contribution 1.337 -0.092 0.015 1.340 sum -12.615 14.106 0.081 18.924 Atomic orbital electron populations 1.22272 0.89948 1.06363 1.06384 1.22919 0.93554 0.86245 0.68762 1.90519 1.73476 1.35579 1.39939 1.20642 0.93914 0.96175 1.13254 1.21519 1.01802 0.88668 0.90681 1.20657 0.89821 1.01069 1.08297 1.20124 0.93584 0.85148 0.91211 1.86059 1.22635 1.28581 1.86222 1.20742 0.74754 0.97374 0.96676 1.20991 0.92794 0.91611 1.53939 0.94184 1.25715 0.99134 0.99745 0.93076 1.69986 1.13928 1.23303 1.49757 0.85730 0.78409 0.79018 0.80053 1.18168 1.19413 1.16864 1.21256 1.01019 0.92456 1.11364 1.21153 0.94334 0.97228 0.91791 0.86460 0.89067 0.86870 0.79614 0.83194 0.95333 0.95459 0.91386 0.85632 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 9.76 71.24 0.69 -1.43 15 2 C 0.40 8.88 7.22 27.95 0.20 9.08 15 3 O -0.51 -15.50 17.08 -3.09 -0.05 -15.55 15 4 C -0.24 -5.89 5.87 -20.15 -0.12 -6.00 15 5 C -0.01 -0.19 9.33 22.44 0.21 0.02 15 6 C -0.18 -4.98 9.95 22.21 0.22 -4.76 15 7 C 0.15 5.38 6.70 22.68 0.15 5.53 15 8 O -0.32 -14.80 10.11 -89.77 -0.91 -15.71 15 9 C 0.18 8.70 3.55 71.23 0.25 8.96 15 10 C -0.56 -32.75 9.99 25.60 0.26 -32.50 15 11 H 0.04 2.64 8.06 -2.91 -0.02 2.62 15 12 C 0.02 1.32 5.47 84.65 0.46 1.79 15 13 N -0.93 -56.82 13.96 21.45 0.30 -56.52 15 14 Si 0.95 41.83 27.47 68.60 1.88 43.71 15 15 H -0.26 -10.80 7.11 99.48 0.71 -10.10 15 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 17 H -0.25 -9.98 6.54 99.48 0.65 -9.33 15 18 C -0.24 -8.31 8.99 22.21 0.20 -8.11 15 19 C -0.03 -0.80 9.57 22.44 0.21 -0.58 15 20 H 0.12 0.88 8.14 -2.38 -0.02 0.86 15 21 H 0.09 0.96 8.14 -2.39 -0.02 0.94 15 22 H 0.11 0.65 6.44 -2.39 -0.02 0.63 15 23 H 0.19 1.82 6.34 -2.91 -0.02 1.80 15 24 H 0.15 3.65 8.06 -2.91 -0.02 3.63 15 25 H 0.03 1.35 6.70 -2.39 -0.02 1.33 15 26 H 0.03 1.27 7.08 -2.39 -0.02 1.26 15 27 H 0.28 15.45 8.31 -92.71 -0.77 14.68 15 28 H 0.13 4.41 6.27 -2.91 -0.02 4.39 15 29 H 0.13 3.79 7.64 -2.91 -0.02 3.77 15 Total: -1.00 -71.41 256.95 5.07 -66.34 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.10 Total: 5.73 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 2.75 Total: -28.00 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.96 Total: -31.26 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.71 kcal Total: -71.41 5.07 -66.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057835663.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.968 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds