Wall clock time and date at job start Mon Mar 30 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46801 * 2 1 4 4 H 1.08997 * 109.47152 * 54.34286 * 3 2 1 5 5 C 1.50706 * 109.46761 * 174.33669 * 3 2 1 6 6 H 1.07992 * 119.99855 * 114.47094 * 5 3 2 7 7 C 1.37879 * 119.99971 * 294.47360 * 5 3 2 8 8 N 1.31520 * 119.99914 * 350.80923 * 7 5 3 9 9 Si 1.86799 * 119.99894 * 170.81474 * 7 5 3 10 10 H 1.48502 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47175 * 119.99605 * 9 7 5 12 12 H 1.48497 * 109.47091 * 239.99898 * 9 7 5 13 13 C 1.50692 * 109.47411 * 294.33468 * 3 2 1 14 14 O 1.20813 * 120.00459 * 270.00151 * 13 3 2 15 15 C 1.47907 * 119.99574 * 90.00305 * 13 3 2 16 16 C 1.39742 * 120.57077 * 179.72198 * 15 13 3 17 17 C 1.38792 * 118.23793 * 179.75649 * 16 15 13 18 18 N 1.32184 * 119.15167 * 0.51717 * 17 16 15 19 19 C 1.31913 * 121.08013 * 359.72067 * 18 17 16 20 20 N 1.31521 * 121.95133 * 0.02641 * 19 18 17 21 21 H 1.09001 * 109.47787 * 58.35859 * 1 2 3 22 22 H 1.09006 * 109.47192 * 298.35836 * 1 2 3 23 23 H 1.09007 * 109.47281 * 178.35979 * 1 2 3 24 24 H 1.08992 * 109.47257 * 120.00276 * 2 1 3 25 25 H 1.09000 * 109.46755 * 240.00746 * 2 1 3 26 26 H 0.96995 * 119.99425 * 180.02562 * 8 7 5 27 27 H 1.08000 * 120.88039 * 0.02562 * 16 15 13 28 28 H 1.07998 * 120.42275 * 180.24196 * 17 16 15 29 29 H 1.08004 * 119.01837 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5962 1.9848 0.8350 5 6 3.5404 1.4449 0.1402 6 1 4.1578 1.8049 -0.6694 7 6 4.1249 0.9873 1.3021 8 7 3.3795 0.7195 2.3520 9 14 5.9756 0.7477 1.3850 10 1 6.5815 1.1165 0.0803 11 1 6.5390 1.6104 2.4544 12 1 6.2776 -0.6748 1.6860 13 6 1.6554 2.1113 -1.2945 14 8 2.4000 2.0617 -2.2446 15 6 0.3663 2.8285 -1.4018 16 6 0.0003 3.4579 -2.5946 17 6 -1.2226 4.1126 -2.6433 18 7 -1.9883 4.1274 -1.5659 19 6 -1.6105 3.5273 -0.4536 20 7 -0.4635 2.8904 -0.3614 21 1 -0.3635 0.5391 -0.8749 22 1 -0.3634 0.4881 0.9044 23 1 -0.3634 -1.0273 -0.0294 24 1 1.8933 -0.5138 0.8899 25 1 1.8932 -0.5137 -0.8901 26 1 3.7908 0.3980 3.1695 27 1 0.6497 3.4317 -3.4571 28 1 -1.5424 4.6073 -3.5484 29 1 -2.2622 3.5607 0.4071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069638287.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:44 Heat of formation + Delta-G solvation = 6.527571 kcal Electronic energy + Delta-G solvation = -14655.293161 eV Core-core repulsion = 12157.827015 eV Total energy + Delta-G solvation = -2497.466147 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88978 -38.55218 -34.50452 -33.49366 -31.88932 -31.59300 -27.86077 -25.67844 -24.22456 -23.28698 -21.43849 -19.26073 -17.39920 -16.80647 -16.19429 -15.30960 -15.07034 -14.79270 -14.33287 -13.83247 -13.55771 -13.40120 -12.73465 -12.37842 -11.64573 -11.42739 -10.90814 -10.79957 -10.66780 -10.64518 -10.26033 -9.97718 -9.84665 -9.57250 -9.40434 -9.00751 -8.50589 -8.34171 -6.07446 -4.09123 0.68677 1.08853 2.97353 3.30003 3.38204 3.44936 4.07322 4.09948 4.21698 4.40142 4.52749 5.09987 5.10815 5.26213 5.60496 5.61822 6.13633 6.19756 6.33952 6.42784 6.50434 6.82970 6.98810 7.06637 7.14938 7.56457 7.66839 7.89727 8.10144 8.20085 8.44907 8.95523 9.53958 11.01726 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.042279 B = 0.008332 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.104025 B = 3359.530897 C = 3597.201221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C 0.019 3.981 4 H 0.073 0.927 5 C -0.516 4.516 6 H 0.066 0.934 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.893 3.107 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.415 3.585 14 O -0.444 6.444 15 C 0.114 3.886 16 C -0.190 4.190 17 C 0.138 3.862 18 N -0.517 5.517 19 C 0.282 3.718 20 N -0.462 5.462 21 H 0.028 0.972 22 H 0.059 0.941 23 H 0.033 0.967 24 H 0.087 0.913 25 H 0.036 0.964 26 H 0.262 0.738 27 H 0.153 0.847 28 H 0.169 0.831 29 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 3.638 -5.838 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C 0.000 4.000 4 H 0.091 0.909 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.289 3.711 14 O -0.314 6.314 15 C -0.032 4.032 16 C -0.212 4.212 17 C -0.029 4.029 18 N -0.232 5.232 19 C -0.007 4.007 20 N -0.178 5.178 21 H 0.047 0.953 22 H 0.078 0.922 23 H 0.052 0.948 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.171 0.829 28 H 0.186 0.814 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.783 3.547 -5.373 10.890 hybrid contribution 1.336 -0.086 -0.584 1.460 sum -7.448 3.461 -5.957 10.146 Atomic orbital electron populations 1.21877 0.98313 0.98958 1.00831 1.21386 0.92331 0.97800 1.02070 1.19147 0.97590 0.93220 0.90010 0.90867 1.21092 0.89810 1.43299 1.01215 0.91602 1.24915 0.98257 0.95281 0.95160 1.69984 1.35299 1.44822 1.02107 0.86518 0.85480 0.77871 0.78123 1.19585 1.21042 1.20838 1.23550 0.80547 0.75166 0.91817 1.90277 1.49586 1.50830 1.40694 1.23124 0.96969 0.93887 0.89201 1.23218 0.98858 0.98487 1.00592 1.23212 0.89643 0.93253 0.96769 1.68304 1.35298 1.18796 1.00770 1.25059 0.91387 0.89023 0.95203 1.68630 1.03627 1.15095 1.30418 0.95301 0.92173 0.94837 0.89502 0.94478 0.92877 0.82920 0.81400 0.78517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.77 37.16 0.33 -2.45 15 2 C -0.10 -2.26 5.28 -26.73 -0.14 -2.40 15 3 C 0.02 0.48 1.72 -92.92 -0.16 0.32 15 4 H 0.07 1.94 7.60 -51.93 -0.39 1.55 15 5 C -0.52 -14.34 8.28 -34.44 -0.28 -14.63 15 6 H 0.07 1.89 7.10 -52.49 -0.37 1.52 15 7 C 0.07 1.82 5.16 -17.82 -0.09 1.73 15 8 N -0.88 -24.80 12.15 55.43 0.67 -24.13 15 9 Si 0.89 21.34 29.55 -169.99 -5.02 16.32 15 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 13 C 0.41 9.29 5.72 -30.35 -0.17 9.11 15 14 O -0.44 -10.55 15.97 5.95 0.10 -10.46 15 15 C 0.11 2.13 5.57 -82.74 -0.46 1.67 15 16 C -0.19 -2.85 9.72 -38.81 -0.38 -3.22 15 17 C 0.14 1.74 11.31 -17.19 -0.19 1.55 15 18 N -0.52 -7.18 10.42 -14.60 -0.15 -7.33 15 19 C 0.28 4.07 12.27 -92.29 -1.13 2.94 15 20 N -0.46 -8.18 8.01 -11.22 -0.09 -8.27 15 21 H 0.03 0.54 5.80 -51.93 -0.30 0.24 15 22 H 0.06 1.18 8.11 -51.93 -0.42 0.75 15 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 24 H 0.09 2.20 6.78 -51.93 -0.35 1.85 15 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.26 6.96 8.31 -40.82 -0.34 6.63 15 27 H 0.15 2.08 7.74 -52.49 -0.41 1.67 15 28 H 0.17 1.42 8.06 -52.49 -0.42 1.00 15 29 H 0.20 2.15 8.06 -52.48 -0.42 1.73 15 LS Contribution 255.06 15.07 3.84 3.84 Total: -1.00 -30.18 255.06 -6.42 -36.59 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.07 Total: -1.17 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.69 Total: -5.39 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.43 Total: -39.73 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.10 Total: -10.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.18 -6.42 -36.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069638287.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.121 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds