Wall clock time and date at job start Mon Mar 30 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46801 * 2 1 4 4 H 1.08997 * 109.47152 * 54.34286 * 3 2 1 5 5 C 1.50706 * 109.46761 * 174.33669 * 3 2 1 6 6 H 1.07992 * 119.99855 * 114.47094 * 5 3 2 7 7 C 1.37879 * 119.99971 * 294.47360 * 5 3 2 8 8 N 1.31520 * 119.99914 * 350.80923 * 7 5 3 9 9 Si 1.86799 * 119.99894 * 170.81474 * 7 5 3 10 10 H 1.48502 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47175 * 119.99605 * 9 7 5 12 12 H 1.48497 * 109.47091 * 239.99898 * 9 7 5 13 13 C 1.50692 * 109.47411 * 294.33468 * 3 2 1 14 14 O 1.20813 * 120.00459 * 270.00151 * 13 3 2 15 15 C 1.47907 * 119.99574 * 90.00305 * 13 3 2 16 16 C 1.39742 * 120.57077 * 179.72198 * 15 13 3 17 17 C 1.38792 * 118.23793 * 179.75649 * 16 15 13 18 18 N 1.32184 * 119.15167 * 0.51717 * 17 16 15 19 19 C 1.31913 * 121.08013 * 359.72067 * 18 17 16 20 20 N 1.31521 * 121.95133 * 0.02641 * 19 18 17 21 21 H 1.09001 * 109.47787 * 58.35859 * 1 2 3 22 22 H 1.09006 * 109.47192 * 298.35836 * 1 2 3 23 23 H 1.09007 * 109.47281 * 178.35979 * 1 2 3 24 24 H 1.08992 * 109.47257 * 120.00276 * 2 1 3 25 25 H 1.09000 * 109.46755 * 240.00746 * 2 1 3 26 26 H 0.96995 * 119.99425 * 180.02562 * 8 7 5 27 27 H 1.08000 * 120.88039 * 0.02562 * 16 15 13 28 28 H 1.07998 * 120.42275 * 180.24196 * 17 16 15 29 29 H 1.08004 * 119.01837 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5962 1.9848 0.8350 5 6 3.5404 1.4449 0.1402 6 1 4.1578 1.8049 -0.6694 7 6 4.1249 0.9873 1.3021 8 7 3.3795 0.7195 2.3520 9 14 5.9756 0.7477 1.3850 10 1 6.5815 1.1165 0.0803 11 1 6.5390 1.6104 2.4544 12 1 6.2776 -0.6748 1.6860 13 6 1.6554 2.1113 -1.2945 14 8 2.4000 2.0617 -2.2446 15 6 0.3663 2.8285 -1.4018 16 6 0.0003 3.4579 -2.5946 17 6 -1.2226 4.1126 -2.6433 18 7 -1.9883 4.1274 -1.5659 19 6 -1.6105 3.5273 -0.4536 20 7 -0.4635 2.8904 -0.3614 21 1 -0.3635 0.5391 -0.8749 22 1 -0.3634 0.4881 0.9044 23 1 -0.3634 -1.0273 -0.0294 24 1 1.8933 -0.5138 0.8899 25 1 1.8932 -0.5137 -0.8901 26 1 3.7908 0.3980 3.1695 27 1 0.6497 3.4317 -3.4571 28 1 -1.5424 4.6073 -3.5484 29 1 -2.2622 3.5607 0.4071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069638287.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:44 Heat of formation + Delta-G solvation = -11.604349 kcal Electronic energy + Delta-G solvation = -14656.079420 eV Core-core repulsion = 12157.827015 eV Total energy + Delta-G solvation = -2498.252406 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.14185 -40.22805 -36.36626 -34.83571 -33.57436 -33.04756 -29.72383 -27.23949 -25.43715 -25.05094 -23.05233 -20.93195 -18.82304 -18.33992 -18.04270 -16.78611 -16.44114 -16.39927 -15.84723 -15.52781 -15.04029 -14.70434 -14.44296 -14.10544 -13.46323 -13.35686 -12.84154 -12.57464 -12.22238 -12.07709 -11.95781 -11.67444 -11.62954 -11.02490 -10.84582 -10.75804 -10.49490 -10.00253 -8.18720 -6.27394 -0.65141 0.00140 1.37821 1.38922 1.42426 1.53924 2.39865 2.72094 2.84555 3.12478 3.21833 3.32726 3.83437 4.01324 4.31746 4.50300 4.51218 4.57860 4.67837 4.85350 5.03781 5.25791 5.31959 5.37436 5.58349 5.68456 5.80980 5.87998 6.15975 6.58231 6.79879 7.04107 7.38588 8.90047 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.042279 B = 0.008332 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.104025 B = 3359.530897 C = 3597.201221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C 0.015 3.985 4 H 0.051 0.949 5 C -0.541 4.541 6 H 0.047 0.953 7 C 0.025 3.975 8 N -0.906 5.906 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.274 1.274 13 C 0.415 3.585 14 O -0.469 6.469 15 C 0.085 3.915 16 C -0.183 4.183 17 C 0.158 3.842 18 N -0.514 5.514 19 C 0.282 3.718 20 N -0.491 5.491 21 H 0.035 0.965 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.265 0.735 27 H 0.165 0.835 28 H 0.219 0.781 29 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 4.375 -6.734 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.130 4.130 3 C -0.004 4.004 4 H 0.069 0.931 5 C -0.579 4.579 6 H 0.066 0.934 7 C -0.175 4.175 8 N -0.544 5.544 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.341 6.341 15 C -0.059 4.059 16 C -0.205 4.205 17 C -0.010 4.010 18 N -0.228 5.228 19 C -0.006 4.006 20 N -0.207 5.207 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.183 0.817 28 H 0.235 0.765 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.146 4.280 -6.251 12.662 hybrid contribution 1.683 -0.250 -0.319 1.731 sum -8.463 4.030 -6.571 11.447 Atomic orbital electron populations 1.21699 0.95224 1.00452 1.01023 1.21231 0.95021 0.96445 1.00320 1.19038 0.95986 0.94263 0.91113 0.93066 1.21308 0.91604 1.43981 1.01020 0.93428 1.25602 1.02348 0.94832 0.94749 1.70065 1.36897 1.45010 1.02444 0.85605 0.80537 0.78202 0.77954 1.19916 1.20132 1.19895 1.23302 0.82236 0.74963 0.90321 1.90244 1.50988 1.52012 1.40899 1.22435 0.95908 0.96130 0.91412 1.23396 1.00018 0.97668 0.99380 1.23979 0.87867 0.91338 0.97796 1.68452 1.35203 1.18218 1.00940 1.25659 0.90515 0.87933 0.96448 1.68545 1.04820 1.16676 1.30691 0.94554 0.92438 0.92616 0.92130 0.95157 0.92544 0.81733 0.76476 0.75552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 8.77 71.98 0.63 -4.26 15 2 C -0.09 -4.37 5.28 30.59 0.16 -4.21 15 3 C 0.02 0.78 1.72 -12.29 -0.02 0.75 15 4 H 0.05 2.84 7.60 -2.39 -0.02 2.82 15 5 C -0.54 -31.15 8.28 25.60 0.21 -30.94 15 6 H 0.05 2.84 7.10 -2.91 -0.02 2.82 15 7 C 0.03 1.40 5.16 84.65 0.44 1.84 15 8 N -0.91 -51.86 12.15 21.45 0.26 -51.60 15 9 Si 0.95 44.43 29.55 68.60 2.03 46.46 15 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 15 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 13 C 0.42 19.01 5.72 28.25 0.16 19.17 15 14 O -0.47 -22.86 15.97 -1.61 -0.03 -22.89 15 15 C 0.09 3.13 5.57 41.86 0.23 3.36 15 16 C -0.18 -5.06 9.72 22.77 0.22 -4.84 15 17 C 0.16 3.34 11.31 84.77 0.96 4.30 15 18 N -0.51 -12.41 10.42 -200.10 -2.08 -14.50 15 19 C 0.28 7.48 12.27 180.93 2.22 9.70 15 20 N -0.49 -16.95 8.01 -189.43 -1.52 -18.47 15 21 H 0.04 1.34 5.80 -2.39 -0.01 1.32 15 22 H 0.06 2.23 8.11 -2.38 -0.02 2.22 15 23 H 0.05 1.88 8.14 -2.38 -0.02 1.86 15 24 H 0.06 3.17 6.78 -2.39 -0.02 3.15 15 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 26 H 0.27 14.30 8.31 -92.71 -0.77 13.53 15 27 H 0.17 4.12 7.74 -2.91 -0.02 4.09 15 28 H 0.22 2.39 8.06 -2.91 -0.02 2.36 15 29 H 0.23 4.33 8.06 -2.91 -0.02 4.30 15 Total: -1.00 -66.75 255.06 5.03 -61.72 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.15 Total: 4.41 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.22 Total: -5.13 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -3.34 Total: -84.57 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.03 Total: -22.89 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.75 5.03 -61.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069638287.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.113 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds