Wall clock time and date at job start Mon Mar 30 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31408 * 118.95643 * 2 1 4 4 C 1.34042 * 120.50096 * 180.02562 * 3 2 1 5 5 C 1.41551 * 120.70858 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00128 * 180.02562 * 5 4 3 7 7 C 1.40117 * 120.00039 * 0.02562 * 5 4 3 8 8 N 1.30671 * 119.99590 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99963 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47270 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46756 * 120.00068 * 9 7 5 12 12 H 1.48500 * 109.47026 * 239.99531 * 9 7 5 13 13 C 1.41028 * 118.58497 * 0.06792 * 4 3 2 14 14 C 1.37714 * 118.39439 * 359.73724 * 13 4 3 15 15 N 1.31976 * 118.95913 * 179.97438 * 2 1 3 16 16 C 1.50582 * 121.29488 * 180.58418 * 14 13 4 17 17 C 1.53026 * 109.67185 * 342.91070 * 16 14 13 18 18 O 1.43205 * 108.62528 * 49.14773 * 17 16 14 19 19 C 1.42833 * 113.20534 * 289.56401 * 18 17 16 20 20 H 1.09003 * 109.46585 * 90.00389 * 1 2 3 21 21 H 1.09004 * 109.47054 * 210.00009 * 1 2 3 22 22 H 1.08998 * 109.47000 * 330.00557 * 1 2 3 23 23 H 0.97003 * 119.99725 * 180.02562 * 8 7 5 24 24 H 1.08998 * 109.44671 * 222.84175 * 16 14 13 25 25 H 1.08997 * 109.42661 * 102.96141 * 16 14 13 26 26 H 1.08997 * 109.61343 * 289.41014 * 17 16 14 27 27 H 1.09000 * 109.61791 * 168.88786 * 17 16 14 28 28 H 1.09005 * 109.36123 * 171.61912 * 19 18 17 29 29 H 1.09002 * 109.36226 * 291.35253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1432 1.1498 0.0000 4 6 3.4831 1.1859 -0.0005 5 6 4.1729 2.4220 0.0000 6 1 5.2528 2.4378 -0.0008 7 6 3.4547 3.6251 0.0017 8 7 2.1481 3.6059 0.0022 9 14 4.3650 5.2562 0.0031 10 1 5.8288 5.0062 0.0016 11 1 3.9944 6.0310 -1.2085 12 1 3.9953 6.0283 1.2165 13 6 4.1910 -0.0338 -0.0025 14 6 3.4720 -1.2083 0.0017 15 7 2.1460 -1.1547 0.0005 16 6 4.1609 -2.5472 0.0130 17 6 5.6232 -2.3777 -0.4052 18 8 6.1961 -1.3095 0.3574 19 6 5.6941 -0.0237 -0.0097 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6509 4.4388 0.0029 24 1 3.6599 -3.2191 -0.6839 25 1 4.1175 -2.9688 1.0172 26 1 5.6745 -2.1374 -1.4671 27 1 6.1691 -3.3006 -0.2096 28 1 6.0538 0.7209 0.7005 29 1 6.0471 0.2302 -1.0093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074276241.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:31 Heat of formation + Delta-G solvation = -16.466650 kcal Electronic energy + Delta-G solvation = -14873.485075 eV Core-core repulsion = 12375.021824 eV Total energy + Delta-G solvation = -2498.463251 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.62056 -37.40465 -34.33346 -32.55357 -31.79427 -29.92150 -28.19194 -26.66141 -23.69482 -23.52249 -21.10303 -19.43070 -17.58831 -16.47739 -15.69095 -15.04790 -14.98636 -14.09832 -13.81597 -13.63942 -12.97196 -12.61425 -12.45445 -12.03946 -11.59522 -11.44586 -11.39658 -11.06488 -10.85471 -10.79172 -10.58179 -10.22317 -9.80199 -9.57995 -8.64269 -8.52178 -7.70254 -7.47825 -6.54702 -4.86309 2.54155 2.77265 3.00199 3.04577 3.15662 3.81036 4.48813 4.62267 5.12974 5.48798 5.53185 5.67700 5.72344 5.94094 6.05628 6.15703 6.16245 6.34193 6.38914 6.43013 6.53748 6.58879 6.73457 6.95066 7.13604 7.22780 7.75080 7.82088 7.94434 8.41646 8.68371 9.00409 10.04554 10.17069 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.011827 C = 0.008340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.520079 B = 2366.806822 C = 3356.586982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.306 3.694 3 N -0.515 5.515 4 C 0.280 3.720 5 C -0.419 4.419 6 H 0.091 0.909 7 C 0.069 3.931 8 N -0.703 5.703 9 Si 0.911 3.089 10 H -0.258 1.258 11 H -0.271 1.271 12 H -0.271 1.271 13 C -0.332 4.332 14 C 0.175 3.825 15 N -0.622 5.622 16 C -0.094 4.094 17 C 0.066 3.934 18 O -0.389 6.389 19 C 0.138 3.862 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.276 0.724 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -3.122 -1.005 4.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.035 3.965 3 N -0.235 5.235 4 C 0.151 3.849 5 C -0.452 4.452 6 H 0.109 0.891 7 C -0.159 4.159 8 N -0.324 5.324 9 Si 0.734 3.266 10 H -0.181 1.181 11 H -0.196 1.196 12 H -0.196 1.196 13 C -0.341 4.341 14 C 0.035 3.965 15 N -0.346 5.346 16 C -0.133 4.133 17 C -0.012 4.012 18 O -0.307 6.307 19 C 0.061 3.939 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.779 -3.003 -0.858 3.594 hybrid contribution 0.935 0.823 -0.228 1.266 sum 2.714 -2.180 -1.086 3.647 Atomic orbital electron populations 1.20242 0.88856 1.01837 1.01662 1.22824 0.96837 0.85041 0.91750 1.69232 1.08637 1.25656 1.19983 1.18593 0.88026 0.91284 0.87031 1.19729 0.94508 0.88982 1.41978 0.89123 1.26151 0.94933 1.01450 0.93345 1.70096 1.06901 1.28725 1.26689 0.86206 0.80875 0.80699 0.78785 1.18108 1.19614 1.19578 1.21161 0.96722 0.95678 1.20556 1.20222 0.89972 0.93190 0.93078 1.67861 1.08638 1.30633 1.27508 1.20834 0.95154 0.94708 1.02562 1.22487 0.92763 0.90843 0.95102 1.87961 1.65202 1.15731 1.61822 1.20896 0.90283 0.83523 0.99248 0.91841 0.91916 0.90894 0.91232 0.90229 0.90374 0.93329 0.89232 0.88837 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.31 36.00 0.37 -1.01 15 2 C 0.31 7.86 7.64 -157.37 -1.20 6.66 15 3 N -0.51 -14.38 7.95 -8.67 -0.07 -14.45 15 4 C 0.28 7.66 6.58 -84.58 -0.56 7.10 15 5 C -0.42 -10.80 8.71 -37.62 -0.33 -11.13 15 6 H 0.09 2.15 6.40 -52.49 -0.34 1.81 15 7 C 0.07 1.69 5.50 -17.34 -0.10 1.59 15 8 N -0.70 -18.13 11.53 55.55 0.64 -17.49 15 9 Si 0.91 17.79 29.56 -169.99 -5.02 12.76 15 10 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 11 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 12 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 13 C -0.33 -8.28 5.86 -103.94 -0.61 -8.89 15 14 C 0.17 4.20 6.68 -82.46 -0.55 3.65 15 15 N -0.62 -15.70 10.24 -7.20 -0.07 -15.77 15 16 C -0.09 -1.77 6.27 -27.93 -0.18 -1.95 15 17 C 0.07 1.10 6.84 37.17 0.25 1.35 15 18 O -0.39 -7.71 10.81 -35.23 -0.38 -8.09 15 19 C 0.14 2.93 5.82 35.82 0.21 3.14 15 20 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 21 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 22 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 23 H 0.28 6.38 8.29 -40.82 -0.34 6.04 15 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 26 H 0.05 0.79 8.07 -51.93 -0.42 0.37 15 27 H 0.09 1.19 8.14 -51.93 -0.42 0.76 15 28 H 0.09 1.95 7.13 -51.93 -0.37 1.58 15 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 15 LS Contribution 248.51 15.07 3.75 3.75 Total: -1.00 -30.33 248.51 -7.06 -37.39 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.22 Total: 1.38 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.68 Total: 0.51 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.50 Total: -47.71 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.38 Total: -8.09 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.02 Total: 12.76 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.33 -7.06 -37.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276241.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.926 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds