Wall clock time and date at job start Mon Mar 30 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31408 * 118.95643 * 2 1 4 4 C 1.34042 * 120.50096 * 180.02562 * 3 2 1 5 5 C 1.41551 * 120.70858 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00128 * 180.02562 * 5 4 3 7 7 C 1.40117 * 120.00039 * 0.02562 * 5 4 3 8 8 N 1.30671 * 119.99590 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99963 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47270 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46756 * 120.00068 * 9 7 5 12 12 H 1.48500 * 109.47026 * 239.99531 * 9 7 5 13 13 C 1.41028 * 118.58497 * 0.06792 * 4 3 2 14 14 C 1.37714 * 118.39439 * 359.73724 * 13 4 3 15 15 N 1.31976 * 118.95913 * 179.97438 * 2 1 3 16 16 C 1.50582 * 121.29488 * 180.58418 * 14 13 4 17 17 C 1.53026 * 109.67185 * 342.91070 * 16 14 13 18 18 O 1.43205 * 108.62528 * 49.14773 * 17 16 14 19 19 C 1.42833 * 113.20534 * 289.56401 * 18 17 16 20 20 H 1.09003 * 109.46585 * 90.00389 * 1 2 3 21 21 H 1.09004 * 109.47054 * 210.00009 * 1 2 3 22 22 H 1.08998 * 109.47000 * 330.00557 * 1 2 3 23 23 H 0.97003 * 119.99725 * 180.02562 * 8 7 5 24 24 H 1.08998 * 109.44671 * 222.84175 * 16 14 13 25 25 H 1.08997 * 109.42661 * 102.96141 * 16 14 13 26 26 H 1.08997 * 109.61343 * 289.41014 * 17 16 14 27 27 H 1.09000 * 109.61791 * 168.88786 * 17 16 14 28 28 H 1.09005 * 109.36123 * 171.61912 * 19 18 17 29 29 H 1.09002 * 109.36226 * 291.35253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1432 1.1498 0.0000 4 6 3.4831 1.1859 -0.0005 5 6 4.1729 2.4220 0.0000 6 1 5.2528 2.4378 -0.0008 7 6 3.4547 3.6251 0.0017 8 7 2.1481 3.6059 0.0022 9 14 4.3650 5.2562 0.0031 10 1 5.8288 5.0062 0.0016 11 1 3.9944 6.0310 -1.2085 12 1 3.9953 6.0283 1.2165 13 6 4.1910 -0.0338 -0.0025 14 6 3.4720 -1.2083 0.0017 15 7 2.1460 -1.1547 0.0005 16 6 4.1609 -2.5472 0.0130 17 6 5.6232 -2.3777 -0.4052 18 8 6.1961 -1.3095 0.3574 19 6 5.6941 -0.0237 -0.0097 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6509 4.4388 0.0029 24 1 3.6599 -3.2191 -0.6839 25 1 4.1175 -2.9688 1.0172 26 1 5.6745 -2.1374 -1.4671 27 1 6.1691 -3.3006 -0.2096 28 1 6.0538 0.7209 0.7005 29 1 6.0471 0.2302 -1.0093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074276241.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:31 Heat of formation + Delta-G solvation = -36.430184 kcal Electronic energy + Delta-G solvation = -14874.350759 eV Core-core repulsion = 12375.021824 eV Total energy + Delta-G solvation = -2499.328935 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40766 -39.03373 -36.19024 -34.28016 -33.62084 -31.57129 -29.89693 -28.56226 -25.40737 -25.10819 -22.93144 -21.14502 -19.48082 -18.20135 -17.28044 -16.81884 -16.57590 -15.75730 -15.56086 -15.32501 -14.59910 -14.26544 -14.12182 -13.66404 -13.25536 -13.10335 -13.02417 -12.69004 -12.64857 -12.49121 -12.04401 -11.84302 -11.56034 -11.24615 -10.45373 -10.34240 -9.56947 -9.39710 -8.40362 -6.81197 0.66610 0.95817 1.39977 1.53542 1.56461 2.17354 2.76843 3.00692 3.53643 3.68887 3.90231 4.04463 4.29106 4.39064 4.45662 4.52643 4.62351 4.76382 4.82695 4.85248 4.89688 4.98660 5.00247 5.14728 5.35290 5.48883 5.93747 6.04124 6.23127 6.53135 6.75788 7.09641 8.16752 8.31931 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.011827 C = 0.008340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.520079 B = 2366.806822 C = 3356.586982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.281 3.719 3 N -0.549 5.549 4 C 0.241 3.759 5 C -0.441 4.441 6 H 0.104 0.896 7 C 0.023 3.977 8 N -0.741 5.741 9 Si 0.993 3.007 10 H -0.248 1.248 11 H -0.265 1.265 12 H -0.266 1.266 13 C -0.354 4.354 14 C 0.156 3.844 15 N -0.633 5.633 16 C -0.091 4.091 17 C 0.064 3.936 18 O -0.395 6.395 19 C 0.147 3.853 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.285 0.715 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -3.370 -1.208 5.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.011 3.989 3 N -0.271 5.271 4 C 0.113 3.887 5 C -0.474 4.474 6 H 0.122 0.878 7 C -0.201 4.201 8 N -0.363 5.363 9 Si 0.812 3.188 10 H -0.171 1.171 11 H -0.189 1.189 12 H -0.190 1.190 13 C -0.363 4.363 14 C 0.017 3.983 15 N -0.357 5.357 16 C -0.129 4.129 17 C -0.012 4.012 18 O -0.313 6.313 19 C 0.070 3.930 20 H 0.096 0.904 21 H 0.101 0.899 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.109 0.891 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.983 -3.287 -1.062 4.564 hybrid contribution 0.518 0.817 -0.168 0.982 sum 3.501 -2.469 -1.229 4.457 Atomic orbital electron populations 1.20276 0.86003 1.02648 1.02814 1.23695 0.98907 0.84989 0.91316 1.69241 1.09378 1.26878 1.21556 1.19170 0.88598 0.93001 0.87960 1.20167 0.95355 0.89534 1.42320 0.87848 1.27165 0.95664 1.05101 0.92215 1.70184 1.08710 1.30328 1.27060 0.84991 0.79696 0.75170 0.78933 1.17066 1.18933 1.19019 1.21571 0.98724 0.95361 1.20600 1.21102 0.89954 0.95407 0.91849 1.67998 1.09460 1.30274 1.27972 1.20961 0.96165 0.92097 1.03632 1.22782 0.91789 0.91541 0.95129 1.87948 1.65124 1.15661 1.62604 1.20743 0.88071 0.84583 0.99633 0.90398 0.89906 0.91144 0.90445 0.88408 0.89574 0.92718 0.84785 0.89084 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.42 10.31 71.24 0.73 -1.69 15 2 C 0.28 14.69 7.64 138.81 1.06 15.75 15 3 N -0.55 -31.53 7.95 -181.33 -1.44 -32.97 15 4 C 0.24 13.52 6.58 40.31 0.27 13.79 15 5 C -0.44 -23.05 8.71 23.54 0.21 -22.85 15 6 H 0.10 4.91 6.40 -2.91 -0.02 4.89 15 7 C 0.02 1.12 5.50 85.32 0.47 1.59 15 8 N -0.74 -38.92 11.53 21.85 0.25 -38.67 15 9 Si 0.99 36.11 29.56 68.60 2.03 38.14 15 10 H -0.25 -8.51 7.11 99.48 0.71 -7.81 15 11 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 12 H -0.27 -9.36 7.11 99.48 0.71 -8.65 15 13 C -0.35 -17.77 5.86 -19.42 -0.11 -17.88 15 14 C 0.16 7.43 6.68 42.27 0.28 7.71 15 15 N -0.63 -31.98 10.24 -176.70 -1.81 -33.79 15 16 C -0.09 -3.21 6.27 29.82 0.19 -3.02 15 17 C 0.06 1.96 6.84 71.99 0.49 2.45 15 18 O -0.39 -14.84 10.81 -148.98 -1.61 -16.45 15 19 C 0.15 6.16 5.82 71.12 0.41 6.58 15 20 H 0.08 2.93 8.14 -2.39 -0.02 2.91 15 21 H 0.08 3.00 8.14 -2.39 -0.02 2.98 15 22 H 0.07 2.88 8.14 -2.39 -0.02 2.86 15 23 H 0.28 13.32 8.29 -92.71 -0.77 12.55 15 24 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 25 H 0.09 2.92 8.14 -2.39 -0.02 2.90 15 26 H 0.05 1.61 8.07 -2.39 -0.02 1.60 15 27 H 0.13 2.93 8.14 -2.39 -0.02 2.91 15 28 H 0.09 3.79 7.13 -2.38 -0.02 3.77 15 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 Total: -1.00 -66.40 248.51 2.58 -63.83 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.16 Total: 17.48 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 4.00 Total: 2.42 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.00 Total: -105.42 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.61 Total: -16.45 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -66.40 2.58 -63.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276241.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.395 kcal (2) G-P(sol) polarization free energy of solvation -66.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds