Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47175 * 270.00492 * 3 2 1 5 5 H 1.48501 * 109.47046 * 30.00028 * 3 2 1 6 6 H 1.48493 * 109.47114 * 150.00036 * 3 2 1 7 7 C 1.37876 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00301 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00030 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47238 * 179.97438 * 9 7 2 11 11 N 1.40309 * 125.73955 * 270.02495 * 10 9 7 12 12 C 1.30908 * 109.09958 * 179.89645 * 11 10 9 13 13 C 1.40012 * 107.60308 * 359.97438 * 12 11 10 14 14 C 1.33161 * 125.73331 * 90.00508 * 10 9 7 15 15 C 1.50585 * 129.79706 * 0.20491 * 14 10 9 16 16 C 1.53170 * 109.23598 * 159.63282 * 15 14 10 17 17 C 1.53192 * 110.67124 * 52.55646 * 16 15 14 18 18 C 1.47626 * 130.74085 * 180.28855 * 13 12 11 19 19 O 1.21310 * 122.72099 * 348.30452 * 18 13 12 20 20 H 0.97003 * 119.99796 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47062 * 59.99837 * 9 7 2 22 22 H 1.08999 * 109.47022 * 300.00011 * 9 7 2 23 23 H 1.08001 * 126.19757 * 179.97438 * 12 11 10 24 24 H 1.09004 * 109.50991 * 39.70650 * 15 14 10 25 25 H 1.08999 * 109.55021 * 279.58964 * 15 14 10 26 26 H 1.09007 * 109.23651 * 292.25169 * 16 15 14 27 27 H 1.08998 * 109.20838 * 172.84329 * 16 15 14 28 28 H 1.09002 * 109.63719 * 54.83650 * 17 16 15 29 29 H 1.08999 * 109.64007 * 175.24320 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 7 4.2730 -3.3479 1.1379 12 6 4.6889 -4.5312 0.7632 13 6 4.6948 -4.5542 -0.6367 14 6 4.2587 -3.3087 -1.0819 15 6 4.1367 -2.9529 -2.5400 16 6 5.0055 -3.9060 -3.3664 17 6 4.6795 -5.3644 -3.0293 18 6 5.0650 -5.6267 -1.5812 19 8 5.6352 -6.6392 -1.2328 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 4.9757 -5.3426 1.4157 24 1 4.4734 -1.9276 -2.6939 25 1 3.0965 -3.0451 -2.8522 26 1 6.0562 -3.7135 -3.1495 27 1 4.8200 -3.7323 -4.4263 28 1 3.6121 -5.5412 -3.1618 29 1 5.2446 -6.0270 -3.6848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082823801.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = 2.059659 kcal Electronic energy + Delta-G solvation = -14576.189358 eV Core-core repulsion = 12078.529468 eV Total energy + Delta-G solvation = -2497.659890 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.50009 -39.71875 -36.47590 -35.75270 -33.88711 -30.81435 -29.81770 -28.96856 -25.00659 -23.65501 -23.04211 -21.10416 -19.44969 -19.27184 -17.89974 -16.82576 -16.39381 -16.08695 -15.68080 -15.39081 -15.10589 -14.95887 -14.51286 -14.02982 -13.90099 -13.61967 -13.10874 -12.66280 -12.53454 -12.19095 -12.03500 -11.87978 -11.84155 -11.72979 -10.91600 -10.50567 -10.32814 -9.49344 -8.43418 -6.56406 0.42001 1.11371 1.34719 1.36608 1.46552 1.62464 2.20626 2.24989 2.89005 3.31672 3.56578 3.68562 3.85053 4.04885 4.30634 4.40822 4.49451 4.51302 4.67565 4.72878 4.79399 5.05191 5.10877 5.15649 5.20933 5.31831 5.56674 5.84054 6.20237 6.47036 6.66038 6.76838 7.08088 8.72894 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.041417 B = 0.008174 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.891499 B = 3424.619652 C = 3701.783686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.026 3.974 3 Si 0.949 3.051 4 H -0.245 1.245 5 H -0.281 1.281 6 H -0.246 1.246 7 C -0.555 4.555 8 H 0.026 0.974 9 C 0.230 3.770 10 N -0.324 5.324 11 N -0.348 5.348 12 C 0.086 3.914 13 C -0.375 4.375 14 C 0.148 3.852 15 C -0.066 4.066 16 C -0.095 4.095 17 C -0.156 4.156 18 C 0.438 3.562 19 O -0.513 6.513 20 H 0.275 0.725 21 H 0.052 0.948 22 H 0.081 0.919 23 H 0.204 0.796 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.110 0.890 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.261 -2.828 -9.351 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.168 1.168 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.593 4.593 8 H 0.045 0.955 9 C 0.110 3.890 10 N -0.098 5.098 11 N -0.168 5.168 12 C -0.098 4.098 13 C -0.387 4.387 14 C 0.009 3.991 15 C -0.105 4.105 16 C -0.133 4.133 17 C -0.193 4.193 18 C 0.319 3.681 19 O -0.392 6.392 20 H 0.084 0.916 21 H 0.070 0.930 22 H 0.099 0.901 23 H 0.221 0.779 24 H 0.122 0.878 25 H 0.119 0.881 26 H 0.092 0.908 27 H 0.141 0.859 28 H 0.128 0.872 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.066 -2.305 -8.123 13.139 hybrid contribution -0.338 0.120 0.201 0.412 sum 9.728 -2.186 -7.921 12.734 Atomic orbital electron populations 1.70023 1.08468 1.29080 1.49638 1.25798 0.95635 1.03255 0.92776 0.85703 0.79312 0.77473 0.80519 1.16849 1.20634 1.16956 1.21149 0.89881 0.93819 1.54471 0.95538 1.19996 0.94105 0.74570 1.00320 1.48614 1.44709 1.13088 1.03363 1.77462 1.24671 1.05500 1.09208 1.24029 0.95647 0.95170 0.94985 1.21213 1.24568 0.98415 0.94544 1.22651 0.92454 0.91034 0.92963 1.20654 1.03429 1.02342 0.84034 1.21493 0.99579 0.90606 1.01574 1.22373 1.04976 0.99609 0.92362 1.22457 0.72255 0.81980 0.91379 1.90466 1.35996 1.29307 1.83465 0.91591 0.93049 0.90093 0.77943 0.87834 0.88082 0.90842 0.85901 0.87152 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.96 21.45 0.30 -54.48 15 2 C 0.03 1.39 5.47 84.65 0.46 1.85 15 3 Si 0.95 38.55 27.47 68.60 1.88 40.43 15 4 H -0.24 -8.97 7.11 99.48 0.71 -8.26 15 5 H -0.28 -11.50 7.11 99.48 0.71 -10.80 15 6 H -0.25 -9.25 6.54 99.48 0.65 -8.60 15 7 C -0.56 -30.23 9.94 25.60 0.25 -29.97 15 8 H 0.03 1.68 8.06 -2.91 -0.02 1.66 15 9 C 0.23 10.19 5.11 85.63 0.44 10.63 15 10 N -0.32 -13.98 3.54 -336.59 -1.19 -15.18 15 11 N -0.35 -15.53 12.52 -56.89 -0.71 -16.24 15 12 C 0.09 3.33 12.08 85.26 1.03 4.36 15 13 C -0.37 -13.46 6.12 -20.12 -0.12 -13.58 15 14 C 0.15 5.29 6.84 42.57 0.29 5.58 15 15 C -0.07 -1.65 5.94 29.87 0.18 -1.47 15 16 C -0.09 -1.64 5.81 30.72 0.18 -1.46 15 17 C -0.16 -3.19 6.13 30.37 0.19 -3.00 15 18 C 0.44 13.63 7.13 28.63 0.20 13.84 15 19 O -0.51 -18.72 17.99 -3.12 -0.06 -18.78 15 20 H 0.27 14.84 8.31 -92.71 -0.77 14.07 15 21 H 0.05 2.31 7.20 -2.39 -0.02 2.29 15 22 H 0.08 3.04 7.00 -2.39 -0.02 3.02 15 23 H 0.20 6.55 8.06 -2.91 -0.02 6.53 15 24 H 0.10 2.28 7.71 -2.38 -0.02 2.26 15 25 H 0.10 2.56 8.14 -2.39 -0.02 2.54 15 26 H 0.07 1.26 8.14 -2.38 -0.02 1.24 15 27 H 0.12 1.26 8.14 -2.39 -0.02 1.24 15 28 H 0.11 2.08 8.14 -2.39 -0.02 2.06 15 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 15 Total: -1.00 -70.84 253.84 4.42 -66.42 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.10 Total: 11.07 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 3.10 Total: -13.25 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.60 Total: -85.89 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.88 Total: 40.43 kcal Total: -70.84 4.42 -66.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082823801.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.479 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds