Wall clock time and date at job start Mon Mar 30 2020 03:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38221 * 119.99906 * 2 1 4 4 C 1.38408 * 120.25361 * 180.02562 * 3 2 1 5 5 C 1.38134 * 120.24754 * 0.26941 * 4 3 2 6 6 C 1.38882 * 119.98380 * 359.43258 * 5 4 3 7 7 N 1.39482 * 120.12208 * 180.26938 * 6 5 4 8 8 C 1.34769 * 120.00205 * 325.25368 * 7 6 5 9 9 O 1.21792 * 120.00064 * 4.50755 * 8 7 6 10 10 C 1.41724 * 119.99971 * 184.50623 * 8 7 6 11 11 H 1.07998 * 120.00009 * 5.04671 * 10 8 7 12 12 C 1.40143 * 119.99925 * 185.04826 * 10 8 7 13 13 N 1.30630 * 120.00279 * 354.95284 * 12 10 8 14 14 Si 1.86798 * 119.99799 * 174.95177 * 12 10 8 15 15 H 1.48502 * 109.47172 * 95.00249 * 14 12 10 16 16 H 1.48508 * 109.47022 * 214.99601 * 14 12 10 17 17 H 1.48499 * 109.47377 * 334.99465 * 14 12 10 18 18 C 1.38725 * 119.99807 * 179.97438 * 2 1 3 19 19 N 1.39632 * 120.11639 * 0.02562 * 18 2 1 20 20 H 1.09001 * 109.47341 * 89.99644 * 1 2 3 21 21 H 1.08996 * 109.47079 * 209.99972 * 1 2 3 22 22 H 1.09005 * 109.46672 * 329.99774 * 1 2 3 23 23 H 1.07998 * 119.86881 * 359.97438 * 3 2 1 24 24 H 1.08005 * 119.87583 * 180.02562 * 4 3 2 25 25 H 1.08002 * 120.00572 * 179.73053 * 5 4 3 26 26 H 0.96998 * 119.99739 * 145.25308 * 7 6 5 27 27 H 0.96999 * 120.00101 * 180.02562 * 13 12 10 28 28 H 0.97000 * 120.00179 * 0.02562 * 19 18 2 29 29 H 0.96999 * 119.99256 * 180.02562 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 3.5822 1.2032 -0.0005 5 6 4.2833 0.0130 -0.0067 6 6 3.5991 -1.1956 -0.0004 7 7 4.3043 -2.3991 -0.0010 8 6 5.4691 -2.4973 -0.6716 9 8 5.9475 -1.5143 -1.2084 10 6 6.1374 -3.7445 -0.7521 11 1 5.6746 -4.6323 -0.3470 12 6 7.3988 -3.8258 -1.3573 13 7 7.9154 -2.7739 -1.9343 14 14 8.3413 -5.4385 -1.3389 15 1 8.0810 -6.1784 -2.5998 16 1 9.7953 -5.1607 -1.2191 17 1 7.8972 -6.2582 -0.1830 18 6 2.2006 -1.2014 0.0005 19 7 1.5048 -2.4121 0.0005 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6559 2.1311 -0.0004 24 1 4.1160 2.1421 -0.0001 25 1 5.3632 0.0224 -0.0115 26 1 3.9562 -3.1653 0.4814 27 1 8.7883 -2.8303 -2.3536 28 1 0.5348 -2.4140 -0.0002 29 1 1.9916 -3.2511 0.0013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083341442.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:40 Heat of formation + Delta-G solvation = -15.592834 kcal Electronic energy + Delta-G solvation = -14460.143999 eV Core-core repulsion = 11961.718639 eV Total energy + Delta-G solvation = -2498.425360 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.38883 -37.15115 -34.05309 -33.56912 -32.36734 -30.71914 -28.02111 -26.30778 -26.06644 -21.89634 -20.89245 -19.38607 -17.77740 -16.50224 -16.30012 -15.58866 -15.25414 -14.10159 -13.77933 -13.66401 -13.43029 -12.79215 -12.58112 -12.48538 -11.86576 -11.70069 -11.35921 -11.10380 -10.84548 -10.65796 -10.50714 -10.32138 -10.04175 -9.14750 -8.74079 -7.67672 -7.33108 -6.49309 -6.32668 -4.85203 2.17620 2.29726 3.05870 3.13671 3.17439 4.00133 4.29835 4.40425 4.61913 4.80745 5.36349 5.45047 5.75450 5.78010 5.86008 5.94948 6.05702 6.23963 6.48384 6.74227 6.98657 7.10179 7.26820 7.37188 7.59858 7.86527 7.93281 8.09110 8.21577 8.39817 8.84308 9.37530 10.43354 10.66053 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.053011 B = 0.007302 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.064719 B = 3833.608892 C = 4271.609719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.159 4.159 3 C -0.119 4.119 4 C -0.155 4.155 5 C -0.093 4.093 6 C 0.123 3.877 7 N -0.701 5.701 8 C 0.547 3.453 9 O -0.567 6.567 10 C -0.542 4.542 11 H 0.068 0.932 12 C 0.089 3.911 13 N -0.749 5.749 14 Si 0.911 3.089 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.166 3.834 19 N -0.882 5.882 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.384 0.616 27 H 0.272 0.728 28 H 0.391 0.609 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 0.861 4.240 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.165 4.165 3 C -0.138 4.138 4 C -0.176 4.176 5 C -0.114 4.114 6 C 0.022 3.978 7 N -0.346 5.346 8 C 0.356 3.644 9 O -0.450 6.450 10 C -0.578 4.578 11 H 0.086 0.914 12 C -0.134 4.134 13 N -0.376 5.376 14 Si 0.735 3.265 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.187 1.187 18 C 0.061 3.939 19 N -0.425 5.425 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.159 0.841 26 H 0.217 0.783 27 H 0.083 0.917 28 H 0.220 0.780 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.594 1.631 3.712 10.416 hybrid contribution 0.104 -1.550 0.148 1.560 sum -9.491 0.081 3.860 10.246 Atomic orbital electron populations 1.20484 0.92221 1.01430 1.01145 1.18983 0.94787 0.91614 1.11070 1.20526 0.94030 0.95989 1.03290 1.20780 0.93705 0.97516 1.05585 1.21306 1.01493 0.90180 0.98456 1.17511 0.88080 0.88415 1.03792 1.43846 1.25506 1.10310 1.54980 1.17002 0.78411 0.90609 0.78400 1.90631 1.65169 1.39389 1.49858 1.20014 1.03401 0.94324 1.40022 0.91381 1.25745 0.97327 0.97410 0.92897 1.70017 1.15030 1.29117 1.23443 0.86302 0.78860 0.81985 0.79332 1.19674 1.20204 1.18714 1.17487 0.89903 0.86360 1.00184 1.42226 1.08144 1.05113 1.87028 0.92359 0.92835 0.92148 0.87360 0.87130 0.84058 0.78332 0.91737 0.78025 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.57 36.01 0.34 -0.84 15 2 C -0.16 -2.65 5.89 -104.45 -0.62 -3.27 15 3 C -0.12 -2.00 9.69 -39.52 -0.38 -2.39 15 4 C -0.16 -2.95 10.04 -39.56 -0.40 -3.35 15 5 C -0.09 -2.09 8.69 -39.38 -0.34 -2.44 15 6 C 0.12 2.70 6.33 -83.53 -0.53 2.17 15 7 N -0.70 -16.14 4.99 -12.29 -0.06 -16.20 15 8 C 0.55 15.42 7.41 -14.93 -0.11 15.31 15 9 O -0.57 -17.96 12.30 5.11 0.06 -17.89 15 10 C -0.54 -14.89 9.31 -37.54 -0.35 -15.24 15 11 H 0.07 1.69 7.85 -52.49 -0.41 1.28 15 12 C 0.09 2.41 5.49 -17.35 -0.10 2.31 15 13 N -0.75 -21.80 11.75 55.56 0.65 -21.14 15 14 Si 0.91 19.47 29.56 -169.99 -5.03 14.45 15 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 18 C 0.17 3.04 6.76 -83.52 -0.56 2.48 15 19 N -0.88 -12.93 8.96 32.55 0.29 -12.63 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.05 0.58 6.54 -51.93 -0.34 0.24 15 22 H 0.06 0.66 8.09 -51.93 -0.42 0.24 15 23 H 0.11 1.51 8.06 -52.49 -0.42 1.09 15 24 H 0.11 1.85 8.06 -52.48 -0.42 1.43 15 25 H 0.14 3.62 6.19 -52.49 -0.33 3.30 15 26 H 0.38 7.59 7.68 -40.82 -0.31 7.27 15 27 H 0.27 7.13 8.29 -40.82 -0.34 6.80 15 28 H 0.39 4.62 6.82 -40.82 -0.28 4.35 15 29 H 0.39 5.59 7.45 -40.82 -0.30 5.28 15 LS Contribution 251.24 15.07 3.79 3.79 Total: -1.00 -32.95 251.24 -6.13 -39.08 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -2.80 Total: 15.81 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.04 Total: -5.25 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.88 Total: -49.98 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.06 Total: -17.89 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.95 -6.13 -39.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083341442.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.486 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds