Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47270 * 2 1 4 4 C 1.50700 * 109.47051 * 240.00054 * 2 1 3 5 5 H 1.08006 * 119.99943 * 239.99656 * 4 2 1 6 6 C 1.37875 * 120.00090 * 60.00287 * 4 2 1 7 7 N 1.31516 * 119.99823 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47318 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46860 * 119.99692 * 8 6 4 11 11 H 1.48495 * 109.46952 * 239.99656 * 8 6 4 12 12 C 1.50708 * 109.47313 * 120.00172 * 2 1 3 13 13 C 1.38281 * 119.98183 * 60.09094 * 12 2 1 14 14 C 1.38209 * 120.13803 * 180.33584 * 13 12 2 15 15 C 1.38280 * 120.14703 * 359.78211 * 14 13 12 16 16 C 1.38505 * 120.02518 * 0.02562 * 15 14 13 17 17 C 1.38501 * 119.98554 * 240.00284 * 12 2 1 18 18 O 1.36505 * 131.54077 * 359.97231 * 17 12 2 19 19 C 1.43982 * 105.48678 * 196.99693 * 18 17 12 20 20 O 1.36500 * 131.53345 * 179.97438 * 16 15 14 21 21 H 1.09003 * 109.47270 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46927 * 299.99776 * 1 2 3 23 23 H 1.08996 * 109.47175 * 59.99724 * 1 2 3 24 24 H 0.97000 * 119.99876 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.93257 * 0.13617 * 13 12 2 26 26 H 1.08006 * 119.92799 * 179.80628 * 14 13 12 27 27 H 1.08000 * 119.98974 * 180.02562 * 15 14 13 28 28 H 1.08996 * 110.57506 * 91.44595 * 19 18 17 29 29 H 1.08998 * 110.57071 * 214.31672 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1483 -2.2856 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 6 2.0324 -0.7105 1.2305 13 6 1.6997 -2.0349 1.4480 14 6 2.1529 -2.6876 2.5788 15 6 2.9447 -2.0204 3.4953 16 6 3.2851 -0.6949 3.2819 17 6 2.8286 -0.0371 2.1420 18 8 3.2951 1.2456 2.1624 19 6 4.3750 1.2469 3.1146 20 8 4.0378 0.1757 4.0159 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7082 1.1609 -3.4843 25 1 1.0817 -2.5595 0.7343 26 1 1.8884 -3.7212 2.7468 27 1 3.2978 -2.5330 4.3779 28 1 5.3240 1.0449 2.6178 29 1 4.4150 2.1971 3.6471 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084348853.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = -62.677446 kcal Electronic energy + Delta-G solvation = -14782.437246 eV Core-core repulsion = 12249.677393 eV Total energy + Delta-G solvation = -2532.759853 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.00049 -39.09375 -37.25779 -35.99724 -33.23921 -30.77303 -29.79888 -27.23478 -26.65507 -24.48968 -23.66422 -21.62930 -18.98452 -18.50048 -18.06168 -18.03902 -17.09645 -16.49971 -15.38882 -15.19496 -15.03606 -14.77774 -14.16780 -13.88812 -13.75439 -13.41623 -13.11119 -12.86890 -12.75223 -12.69180 -12.19024 -12.06368 -11.67615 -11.23887 -11.02878 -10.49182 -9.40266 -8.94891 -8.10400 -6.25688 0.31530 0.45011 1.41599 1.43127 1.55170 1.94022 2.42700 2.67362 2.82235 3.17603 3.64320 3.88262 4.04938 4.29115 4.32873 4.41177 4.51499 4.69065 4.84191 4.96407 5.14770 5.27756 5.33070 5.42440 5.52308 5.61608 5.72763 5.97803 6.03065 6.28310 6.33370 6.83189 7.42433 8.94989 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.034914 B = 0.008979 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.779236 B = 3117.490282 C = 3345.956937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.074 3.926 3 H -0.007 1.007 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.284 1.284 12 C -0.048 4.048 13 C -0.113 4.113 14 C -0.098 4.098 15 C -0.116 4.116 16 C 0.014 3.986 17 C -0.009 4.009 18 O -0.337 6.337 19 C 0.204 3.796 20 O -0.320 6.320 21 H 0.043 0.957 22 H 0.017 0.983 23 H 0.060 0.940 24 H 0.262 0.738 25 H 0.137 0.863 26 H 0.175 0.825 27 H 0.163 0.837 28 H 0.093 0.907 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -5.117 10.462 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.056 3.944 3 H 0.011 0.989 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.210 1.210 12 C -0.049 4.049 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.134 4.134 16 C -0.030 4.030 17 C -0.053 4.053 18 O -0.254 6.254 19 C 0.093 3.907 20 O -0.237 6.237 21 H 0.063 0.937 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.192 0.808 27 H 0.180 0.820 28 H 0.111 0.889 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.333 -4.795 10.446 12.284 hybrid contribution 0.366 0.472 -1.089 1.242 sum 4.700 -4.324 9.357 11.328 Atomic orbital electron populations 1.21621 0.96895 0.99821 0.99442 1.17641 0.93454 0.93600 0.89743 0.98926 1.21401 1.31237 1.12405 0.90801 0.92458 1.25793 0.95190 0.95674 1.02025 1.70047 1.37639 1.24183 1.24037 0.85472 0.78267 0.78641 0.79099 1.18864 1.20121 1.20973 1.19718 0.96250 0.94665 0.94241 1.21029 1.01035 0.92335 0.98672 1.21308 0.96417 1.01394 0.92438 1.20361 1.01725 0.88709 1.02648 1.20101 0.98799 0.93527 0.90587 1.19946 1.03456 0.84073 0.97809 1.87341 1.50021 1.25693 1.62362 1.26002 0.90113 0.92816 0.81757 1.87231 1.68168 1.32738 1.35554 0.93747 0.96369 0.92116 0.92884 0.84531 0.80755 0.81991 0.88907 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.78 71.98 0.63 -5.43 15 2 C 0.07 3.97 2.48 -12.28 -0.03 3.94 15 3 H -0.01 -0.46 7.69 -2.39 -0.02 -0.48 15 4 C -0.52 -29.09 8.24 25.60 0.21 -28.88 15 5 H 0.06 3.13 7.60 -2.91 -0.02 3.11 15 6 C 0.01 0.65 5.30 84.65 0.45 1.10 15 7 N -0.92 -54.03 11.32 21.45 0.24 -53.79 15 8 Si 0.96 43.63 29.54 68.60 2.03 45.65 15 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 15 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 12 C -0.05 -2.19 4.75 -19.79 -0.09 -2.29 15 13 C -0.11 -4.22 8.70 22.27 0.19 -4.03 15 14 C -0.10 -2.79 10.04 22.27 0.22 -2.57 15 15 C -0.12 -3.38 10.06 22.34 0.22 -3.15 15 16 C 0.01 0.50 7.15 22.59 0.16 0.66 15 17 C -0.01 -0.40 6.83 22.59 0.15 -0.24 15 18 O -0.34 -14.27 11.07 -76.11 -0.84 -15.11 15 19 C 0.20 6.04 8.89 113.37 1.01 7.05 15 20 O -0.32 -10.49 11.40 -76.05 -0.87 -11.35 15 21 H 0.04 2.04 7.39 -2.39 -0.02 2.03 15 22 H 0.02 0.82 8.14 -2.38 -0.02 0.80 15 23 H 0.06 3.36 6.07 -2.39 -0.01 3.35 15 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 15 25 H 0.14 5.00 7.58 -2.91 -0.02 4.98 15 26 H 0.18 3.35 8.06 -2.91 -0.02 3.32 15 27 H 0.16 3.45 8.06 -2.91 -0.02 3.43 15 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 29 H 0.16 3.36 8.14 -2.39 -0.02 3.34 15 Total: -1.00 -67.62 251.04 4.84 -62.77 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.15 Total: 5.66 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.13 Total: -33.83 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.24 Total: -53.79 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -1.71 Total: -26.46 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -67.62 4.84 -62.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348853.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.096 kcal (2) G-P(sol) polarization free energy of solvation -67.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds