Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47026 * 240.00035 * 3 2 1 5 5 H 1.48501 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46795 * 120.00352 * 3 2 1 7 7 C 1.37877 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.47181 * 180.02562 * 9 7 2 11 11 O 1.21422 * 119.99585 * 359.97438 * 10 9 7 12 12 C 1.41480 * 120.00039 * 180.02562 * 10 9 7 13 13 C 1.38174 * 126.97834 * 359.97274 * 12 10 9 14 14 N 1.33147 * 107.55118 * 180.02562 * 13 12 10 15 15 C 1.30924 * 109.82845 * 359.97438 * 14 13 12 16 16 N 1.34387 * 109.48942 * 0.02562 * 15 14 13 17 17 C 1.46501 * 126.46037 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49878 * 8.77591 * 17 16 15 19 19 C 1.52995 * 117.49750 * 300.11405 * 17 16 15 20 20 H 0.96998 * 119.99441 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47322 * 60.00316 * 9 7 2 22 22 H 1.09003 * 109.47487 * 300.00086 * 9 7 2 23 23 H 1.08009 * 126.22570 * 359.97438 * 13 12 10 24 24 H 1.08005 * 125.25886 * 179.73696 * 15 14 13 25 25 H 1.09002 * 115.54970 * 154.44126 * 17 16 15 26 26 H 1.08998 * 117.49660 * 359.97438 * 18 17 16 27 27 H 1.08996 * 117.49811 * 145.01676 * 18 17 16 28 28 H 1.09006 * 117.49829 * 214.97819 * 19 17 16 29 29 H 1.09003 * 117.50438 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4241 -3.4227 -0.0010 12 6 1.7587 -4.9785 -0.0011 13 6 0.4410 -5.3942 -0.0011 14 7 0.4399 -6.7256 -0.0012 15 6 1.6712 -7.1707 -0.0017 16 7 2.5235 -6.1317 -0.0015 17 6 3.9866 -6.2059 -0.0014 18 6 4.6243 -7.5812 -0.2086 19 6 4.6575 -6.9219 1.1725 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 -0.4299 -4.7552 -0.0004 24 1 1.9577 -8.2120 0.0022 25 1 4.5011 -5.3436 -0.4255 26 1 3.9551 -8.4308 -0.3446 27 1 5.5584 -7.6236 -0.7687 28 1 5.6137 -6.5308 1.5205 29 1 4.0104 -7.3374 1.9450 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085189860.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = 47.769851 kcal Electronic energy + Delta-G solvation = -14333.138002 eV Core-core repulsion = 11837.460254 eV Total energy + Delta-G solvation = -2495.677747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.96850 -38.03678 -37.35182 -32.98282 -31.84255 -30.50205 -28.27102 -24.47879 -23.33086 -22.79129 -22.04229 -20.32679 -18.76692 -17.05451 -16.24176 -15.73613 -15.10553 -14.88896 -14.48728 -14.03001 -13.67566 -13.43679 -13.26488 -12.64315 -12.00718 -11.87613 -11.39020 -11.20618 -10.94314 -10.83438 -10.61869 -10.07210 -9.88019 -9.30843 -9.27501 -8.66266 -8.44484 -8.23144 -6.05785 -4.06552 1.45150 2.67355 3.01387 3.35760 3.38743 3.43338 3.53838 3.83455 4.29810 4.44225 4.58372 4.65893 4.68725 4.97939 5.28067 5.32068 5.48115 5.53168 5.60008 5.73285 5.82199 6.18158 6.70265 6.84513 7.22892 7.26902 7.34485 7.92415 8.09657 8.21028 8.61840 9.01735 9.58018 11.06261 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.041807 B = 0.007235 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.580954 B = 3868.936914 C = 4455.432110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.419 3.581 11 O -0.477 6.477 12 C -0.100 4.100 13 C 0.053 3.947 14 N -0.501 5.501 15 C 0.186 3.814 16 N -0.403 5.403 17 C 0.060 3.940 18 C -0.178 4.178 19 C -0.175 4.175 20 H 0.263 0.737 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.188 0.812 24 H 0.201 0.799 25 H 0.156 0.844 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -14.012 0.347 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.047 4.047 10 C 0.300 3.700 11 O -0.354 6.354 12 C -0.213 4.213 13 C -0.101 4.101 14 N -0.219 5.219 15 C -0.095 4.095 16 N -0.083 5.083 17 C -0.044 4.044 18 C -0.215 4.215 19 C -0.213 4.213 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.205 0.795 24 H 0.218 0.782 25 H 0.174 0.826 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.878 -14.276 0.343 15.442 hybrid contribution 0.994 1.239 0.022 1.588 sum 6.871 -13.037 0.365 14.741 Atomic orbital electron populations 1.69944 1.06001 1.27059 1.50665 1.24985 0.94885 0.99378 0.95093 0.86525 0.79445 0.82495 0.78779 1.20166 1.21294 1.20172 1.21101 0.94062 0.89471 1.50877 0.91025 1.19452 0.94575 0.90810 0.99907 1.21346 0.91159 0.87179 0.70358 1.90371 1.19193 1.87648 1.38237 1.21736 0.92426 0.89754 1.17402 1.23259 0.95293 0.91015 1.00507 1.70101 1.20020 1.11339 1.20436 1.24880 0.84992 0.94636 1.04970 1.44985 1.06050 1.06660 1.50583 1.22305 0.77622 0.99120 1.05342 1.23446 1.03173 0.94799 1.00104 1.23465 1.03165 1.02740 0.91930 0.92768 0.92526 0.92547 0.79511 0.78206 0.82641 0.87925 0.86915 0.87037 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.41 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.52 -14.76 8.92 -34.44 -0.31 -15.07 15 8 H 0.07 2.10 6.75 -52.49 -0.35 1.74 15 9 C -0.01 -0.26 4.77 -29.03 -0.14 -0.40 15 10 C 0.42 9.51 6.94 -33.07 -0.23 9.28 15 11 O -0.48 -11.58 13.92 5.43 0.08 -11.50 15 12 C -0.10 -1.94 6.76 -83.70 -0.57 -2.50 15 13 C 0.05 0.96 11.38 -17.00 -0.19 0.77 15 14 N -0.50 -8.52 11.19 -14.10 -0.16 -8.68 15 15 C 0.19 2.68 11.84 -90.61 -1.07 1.61 15 16 N -0.40 -6.50 3.11 -108.76 -0.34 -6.84 15 17 C 0.06 0.82 6.26 -67.93 -0.43 0.39 15 18 C -0.18 -1.59 9.99 -26.69 -0.27 -1.86 15 19 C -0.18 -1.82 10.39 -26.69 -0.28 -2.09 15 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.06 1.45 8.14 -51.93 -0.42 1.02 15 22 H 0.06 1.44 8.14 -51.93 -0.42 1.02 15 23 H 0.19 3.10 7.96 -52.48 -0.42 2.68 15 24 H 0.20 1.98 7.00 -52.48 -0.37 1.61 15 25 H 0.16 2.42 6.61 -51.93 -0.34 2.08 15 26 H 0.10 0.77 6.83 -51.93 -0.35 0.41 15 27 H 0.11 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.11 1.03 8.14 -51.93 -0.42 0.61 15 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 259.25 15.07 3.91 3.91 Total: -1.00 -32.33 259.25 -7.46 -39.78 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.09 Total: 0.20 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.57 Total: -8.32 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.24 Total: -40.93 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.33 -7.46 -39.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085189860.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.553 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds