Wall clock time and date at job start Mon Mar 30 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47026 * 240.00035 * 3 2 1 5 5 H 1.48501 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46795 * 120.00352 * 3 2 1 7 7 C 1.37877 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.47181 * 180.02562 * 9 7 2 11 11 O 1.21422 * 119.99585 * 359.97438 * 10 9 7 12 12 C 1.41480 * 120.00039 * 180.02562 * 10 9 7 13 13 C 1.38174 * 126.97834 * 359.97274 * 12 10 9 14 14 N 1.33147 * 107.55118 * 180.02562 * 13 12 10 15 15 C 1.30924 * 109.82845 * 359.97438 * 14 13 12 16 16 N 1.34387 * 109.48942 * 0.02562 * 15 14 13 17 17 C 1.46501 * 126.46037 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49878 * 8.77591 * 17 16 15 19 19 C 1.52995 * 117.49750 * 300.11405 * 17 16 15 20 20 H 0.96998 * 119.99441 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47322 * 60.00316 * 9 7 2 22 22 H 1.09003 * 109.47487 * 300.00086 * 9 7 2 23 23 H 1.08009 * 126.22570 * 359.97438 * 13 12 10 24 24 H 1.08005 * 125.25886 * 179.73696 * 15 14 13 25 25 H 1.09002 * 115.54970 * 154.44126 * 17 16 15 26 26 H 1.08998 * 117.49660 * 359.97438 * 18 17 16 27 27 H 1.08996 * 117.49811 * 145.01676 * 18 17 16 28 28 H 1.09006 * 117.49829 * 214.97819 * 19 17 16 29 29 H 1.09003 * 117.50438 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4241 -3.4227 -0.0010 12 6 1.7587 -4.9785 -0.0011 13 6 0.4410 -5.3942 -0.0011 14 7 0.4399 -6.7256 -0.0012 15 6 1.6712 -7.1707 -0.0017 16 7 2.5235 -6.1317 -0.0015 17 6 3.9866 -6.2059 -0.0014 18 6 4.6243 -7.5812 -0.2086 19 6 4.6575 -6.9219 1.1725 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 -0.4299 -4.7552 -0.0004 24 1 1.9577 -8.2120 0.0022 25 1 4.5011 -5.3436 -0.4255 26 1 3.9551 -8.4308 -0.3446 27 1 5.5584 -7.6236 -0.7687 28 1 5.6137 -6.5308 1.5205 29 1 4.0104 -7.3374 1.9450 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085189860.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:08 Heat of formation + Delta-G solvation = 28.415418 kcal Electronic energy + Delta-G solvation = -14333.977273 eV Core-core repulsion = 11837.460254 eV Total energy + Delta-G solvation = -2496.517019 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.26566 -39.81427 -38.28876 -35.12890 -33.05432 -32.21245 -30.07936 -26.26120 -24.62009 -23.72772 -23.44174 -21.63293 -20.16662 -18.57654 -18.14654 -16.93323 -16.77605 -16.30109 -16.20236 -15.52364 -15.17868 -14.79930 -14.70244 -14.18379 -13.68776 -13.22100 -12.84721 -12.57751 -12.56118 -12.42352 -12.09240 -11.80838 -11.47224 -11.22352 -10.62467 -10.44918 -10.40888 -9.63142 -8.24268 -6.32965 -0.00891 1.39719 1.42456 1.49708 1.53259 1.68341 2.22073 2.40444 2.69694 3.10617 3.30390 3.46926 3.65608 3.78973 3.90422 4.08350 4.36128 4.54814 4.61291 4.71630 4.84097 5.04564 5.08248 5.26326 5.27416 5.45492 5.70837 6.10067 6.11337 6.69638 6.77827 6.91931 7.35544 8.87615 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.041807 B = 0.007235 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.580954 B = 3868.936914 C = 4455.432110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.057 0.943 9 C -0.007 4.007 10 C 0.426 3.574 11 O -0.505 6.505 12 C -0.142 4.142 13 C 0.064 3.936 14 N -0.522 5.522 15 C 0.215 3.785 16 N -0.400 5.400 17 C 0.010 3.990 18 C -0.136 4.136 19 C -0.167 4.167 20 H 0.268 0.732 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.190 0.810 24 H 0.254 0.746 25 H 0.125 0.875 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 -15.975 0.398 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.045 4.045 10 C 0.308 3.692 11 O -0.384 6.384 12 C -0.255 4.255 13 C -0.092 4.092 14 N -0.241 5.241 15 C -0.066 4.066 16 N -0.078 5.078 17 C -0.094 4.094 18 C -0.173 4.173 19 C -0.205 4.205 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.207 0.793 24 H 0.270 0.730 25 H 0.142 0.858 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.137 0.863 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.769 -16.248 0.395 17.606 hybrid contribution 0.719 1.726 0.008 1.870 sum 7.489 -14.521 0.403 16.344 Atomic orbital electron populations 1.70033 1.07210 1.28175 1.50836 1.25796 0.95823 1.02751 0.94394 0.85525 0.78381 0.78357 0.78915 1.19668 1.19972 1.19683 1.21354 0.93691 0.91418 1.51705 0.92523 1.19291 0.94809 0.91375 0.98976 1.20958 0.90115 0.88362 0.69734 1.90349 1.19768 1.88247 1.40083 1.21090 0.93428 0.89490 1.21450 1.23400 0.94961 0.91891 0.98958 1.70155 1.21602 1.10375 1.21953 1.25893 0.83852 0.96081 1.00749 1.45085 1.07232 1.05763 1.49730 1.22427 0.76260 1.01253 1.09425 1.23660 1.03343 0.92062 0.98224 1.23573 1.02895 1.01676 0.92325 0.92355 0.93498 0.93528 0.79255 0.73008 0.85753 0.85339 0.84904 0.86328 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.65 13.29 21.45 0.28 -54.36 15 2 C 0.01 0.65 5.46 84.65 0.46 1.11 15 3 Si 0.96 45.31 29.54 68.60 2.03 47.33 15 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 5 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 7 C -0.54 -32.18 8.92 25.60 0.23 -31.96 15 8 H 0.06 3.45 6.75 -2.91 -0.02 3.44 15 9 C -0.01 -0.37 4.77 29.10 0.14 -0.23 15 10 C 0.43 20.22 6.94 26.49 0.18 20.40 15 11 O -0.50 -25.72 13.92 -3.47 -0.05 -25.77 15 12 C -0.14 -5.57 6.76 38.89 0.26 -5.31 15 13 C 0.06 2.30 11.38 84.48 0.96 3.26 15 14 N -0.52 -16.79 11.19 -198.54 -2.22 -19.01 15 15 C 0.22 5.52 11.84 180.35 2.13 7.65 15 16 N -0.40 -12.39 3.11 -498.02 -1.55 -13.94 15 17 C 0.01 0.25 6.26 44.99 0.28 0.53 15 18 C -0.14 -1.87 9.99 30.62 0.31 -1.56 15 19 C -0.17 -3.01 10.39 30.62 0.32 -2.69 15 20 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 21 H 0.05 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.05 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.19 6.48 7.96 -2.91 -0.02 6.45 15 24 H 0.25 3.49 7.00 -2.91 -0.02 3.47 15 25 H 0.12 4.00 6.61 -2.39 -0.02 3.99 15 26 H 0.13 1.13 6.83 -2.39 -0.02 1.12 15 27 H 0.13 1.34 8.14 -2.39 -0.02 1.32 15 28 H 0.12 1.94 8.14 -2.38 -0.02 1.92 15 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 15 Total: -1.00 -71.99 259.25 4.93 -67.06 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.16 Total: 7.48 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 5.28 Total: -8.80 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -3.48 Total: -87.31 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.99 4.93 -67.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085189860.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.478 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds