Wall clock time and date at job start Mon Mar 30 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00349 * 2 1 4 4 C 1.50702 * 109.47600 * 179.97438 * 3 2 1 5 5 O 1.21344 * 119.99646 * 0.02562 * 4 3 2 6 6 C 1.46597 * 120.00373 * 179.97438 * 4 3 2 7 7 C 1.39691 * 120.58842 * 354.38251 * 6 4 3 8 8 C 1.38017 * 120.02049 * 179.97438 * 7 6 4 9 9 C 1.38731 * 121.30377 * 0.02562 * 8 7 6 10 10 C 1.37498 * 121.22785 * 359.97438 * 9 8 7 11 11 C 1.40827 * 119.86846 * 359.73236 * 10 9 8 12 12 C 1.40723 * 120.62578 * 180.27755 * 11 10 9 13 13 H 1.07999 * 120.00010 * 148.21360 * 12 11 10 14 14 C 1.40398 * 119.99681 * 328.21423 * 12 11 10 15 15 N 1.30563 * 119.99865 * 164.81552 * 14 12 11 16 16 Si 1.86797 * 120.00015 * 344.81375 * 14 12 11 17 17 H 1.48502 * 109.47096 * 90.25791 * 16 14 12 18 18 H 1.48499 * 109.47219 * 210.25370 * 16 14 12 19 19 H 1.48493 * 109.47508 * 330.25896 * 16 14 12 20 20 H 1.08995 * 109.47024 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46809 * 300.00152 * 1 2 3 22 22 H 1.09003 * 109.46631 * 60.00061 * 1 2 3 23 23 H 1.08997 * 109.47065 * 299.99997 * 3 2 1 24 24 H 1.09008 * 109.47165 * 59.99466 * 3 2 1 25 25 H 1.07998 * 119.99170 * 359.95363 * 7 6 4 26 26 H 1.07997 * 119.34616 * 180.02562 * 8 7 6 27 27 H 1.07995 * 119.37744 * 179.97438 * 9 8 7 28 28 H 1.08003 * 120.06477 * 179.97438 * 10 9 8 29 29 H 0.96994 * 119.99983 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0344 0.0909 0.0006 6 6 4.3436 2.3941 0.0002 7 6 3.7607 3.6580 -0.1185 8 6 4.5542 4.7873 -0.1171 9 6 5.9337 4.6988 0.0002 10 6 6.5623 3.4818 0.1200 11 6 5.8009 2.2971 0.1306 12 6 6.4272 1.0435 0.2582 13 1 5.9187 0.2345 0.7616 14 6 7.7133 0.8444 -0.2687 15 7 8.4138 -0.1958 0.0945 16 14 8.4220 2.0678 -1.4895 17 1 9.1623 3.1261 -0.7566 18 1 9.3483 1.3651 -2.4133 19 1 7.3190 2.6848 -2.2691 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6887 1.8463 -0.8900 24 1 1.6886 1.8464 0.8900 25 1 2.6888 3.7516 -0.2118 26 1 4.0920 5.7590 -0.2091 27 1 6.5247 5.6026 -0.0026 28 1 7.6376 3.4347 0.2098 29 1 9.3021 -0.3335 -0.2699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104523866.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:40 Heat of formation + Delta-G solvation = -62.040486 kcal Electronic energy + Delta-G solvation = -14470.979265 eV Core-core repulsion = 11938.247033 eV Total energy + Delta-G solvation = -2532.732232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.77618 -37.29434 -36.25749 -33.84926 -30.80305 -30.34285 -28.14510 -25.95418 -24.96837 -22.26905 -20.96917 -18.83267 -17.60600 -16.34019 -15.74304 -15.70420 -15.37929 -14.49677 -14.13785 -13.78625 -13.39255 -13.06263 -12.66582 -12.49973 -12.10556 -11.76943 -11.37186 -11.13123 -10.93458 -10.86390 -10.45960 -10.12340 -9.84743 -9.46721 -9.28476 -8.30804 -7.86060 -7.59951 -7.10274 -4.62247 1.89515 2.58624 3.01741 3.10003 3.22586 3.61959 3.85078 3.94806 4.42686 5.16734 5.27455 5.43102 5.46491 5.57986 5.74619 5.76701 5.81799 5.96154 6.18399 6.47439 6.61305 6.66742 7.01536 7.22647 7.32634 7.42786 7.63829 7.73458 7.95811 8.24555 8.55136 8.66902 8.92241 9.85004 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.010370 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.125097 B = 2699.577253 C = 3487.264572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.018 3.982 4 C 0.385 3.615 5 O -0.445 6.445 6 C -0.288 4.288 7 C -0.027 4.027 8 C -0.266 4.266 9 C -0.054 4.054 10 C -0.241 4.241 11 C 0.114 3.886 12 C -0.385 4.385 13 H 0.119 0.881 14 C 0.078 3.922 15 N -0.775 5.775 16 Si 0.918 3.082 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.243 1.243 20 H 0.083 0.917 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 5.450 -1.478 9.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C -0.059 4.059 4 C 0.265 3.735 5 O -0.322 6.322 6 C -0.290 4.290 7 C -0.046 4.046 8 C -0.285 4.285 9 C -0.073 4.073 10 C -0.259 4.259 11 C 0.110 3.890 12 C -0.410 4.410 13 H 0.137 0.863 14 C -0.146 4.146 15 N -0.397 5.397 16 Si 0.743 3.257 17 H -0.191 1.191 18 H -0.214 1.214 19 H -0.166 1.166 20 H 0.102 0.898 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.903 4.470 -1.456 8.352 hybrid contribution 0.075 0.899 -0.456 1.011 sum -6.828 5.369 -1.912 8.894 Atomic orbital electron populations 1.22754 0.81946 1.02477 0.99567 1.88043 1.18687 1.26964 1.95316 1.22968 0.96110 0.85479 1.01329 1.21611 0.87659 0.89384 0.74799 1.90512 1.75014 1.29471 1.37211 1.20692 0.93885 0.92004 1.22434 1.20891 0.97234 0.92270 0.94160 1.20174 0.93657 0.96690 1.18015 1.20656 0.94526 0.96230 0.95899 1.21156 0.98594 0.92756 1.13429 1.18602 0.90045 0.92647 0.87703 1.20168 0.97117 0.98215 1.25493 0.86335 1.26523 0.95626 0.95917 0.96513 1.69553 1.10334 1.25733 1.34071 0.86258 0.79606 0.79607 0.80190 1.19102 1.21427 1.16594 0.89812 0.94350 0.94362 0.91188 0.91093 0.88351 0.88706 0.88745 0.87609 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 15 2 O -0.37 -6.96 10.24 -55.13 -0.56 -7.52 15 3 C 0.02 0.33 5.12 36.01 0.18 0.51 15 4 C 0.38 8.95 7.15 -30.94 -0.22 8.72 15 5 O -0.44 -12.15 13.93 -14.40 -0.20 -12.35 15 6 C -0.29 -6.78 6.06 -102.60 -0.62 -7.40 15 7 C -0.03 -0.54 9.47 -39.12 -0.37 -0.91 15 8 C -0.27 -5.25 9.98 -39.48 -0.39 -5.65 15 9 C -0.05 -1.14 9.97 -39.67 -0.40 -1.53 15 10 C -0.24 -5.67 7.23 -38.87 -0.28 -5.96 15 11 C 0.11 2.95 5.25 -104.59 -0.55 2.40 15 12 C -0.38 -10.70 8.41 -37.83 -0.32 -11.02 15 13 H 0.12 3.63 6.15 -52.49 -0.32 3.31 15 14 C 0.08 2.03 5.45 -17.28 -0.09 1.94 15 15 N -0.78 -20.47 13.91 55.57 0.77 -19.69 15 16 Si 0.92 20.47 24.54 -169.99 -4.17 16.30 15 17 H -0.27 -5.59 6.52 56.52 0.37 -5.22 15 18 H -0.29 -6.12 7.11 56.52 0.40 -5.72 15 19 H -0.24 -5.60 6.98 56.52 0.39 -5.20 15 20 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.04 0.42 8.14 -51.93 -0.42 0.00 15 22 H 0.04 0.42 8.14 -51.93 -0.42 0.00 15 23 H 0.07 1.08 7.93 -51.93 -0.41 0.67 15 24 H 0.07 1.10 8.14 -51.92 -0.42 0.68 15 25 H 0.10 1.60 7.02 -52.49 -0.37 1.24 15 26 H 0.09 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.09 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.11 2.44 4.66 -52.48 -0.24 2.20 15 29 H 0.29 6.84 8.29 -40.82 -0.34 6.50 15 LS Contribution 251.05 15.07 3.78 3.78 Total: -1.00 -30.13 251.05 -5.39 -35.51 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.06 Total: 1.37 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.95 Total: -17.40 kcal Atomic # 7 Polarization: -20.47 SS G_CDS: 0.77 Total: -19.69 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.76 Total: -19.87 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.17 Total: 16.30 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.13 -5.39 -35.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104523866.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.526 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds