Wall clock time and date at job start Mon Mar 30 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00349 * 2 1 4 4 C 1.50702 * 109.47600 * 179.97438 * 3 2 1 5 5 O 1.21344 * 119.99646 * 0.02562 * 4 3 2 6 6 C 1.46597 * 120.00373 * 179.97438 * 4 3 2 7 7 C 1.39691 * 120.58842 * 354.38251 * 6 4 3 8 8 C 1.38017 * 120.02049 * 179.97438 * 7 6 4 9 9 C 1.38731 * 121.30377 * 0.02562 * 8 7 6 10 10 C 1.37498 * 121.22785 * 359.97438 * 9 8 7 11 11 C 1.40827 * 119.86846 * 359.73236 * 10 9 8 12 12 C 1.40723 * 120.62578 * 180.27755 * 11 10 9 13 13 H 1.07999 * 120.00010 * 148.21360 * 12 11 10 14 14 C 1.40398 * 119.99681 * 328.21423 * 12 11 10 15 15 N 1.30563 * 119.99865 * 164.81552 * 14 12 11 16 16 Si 1.86797 * 120.00015 * 344.81375 * 14 12 11 17 17 H 1.48502 * 109.47096 * 90.25791 * 16 14 12 18 18 H 1.48499 * 109.47219 * 210.25370 * 16 14 12 19 19 H 1.48493 * 109.47508 * 330.25896 * 16 14 12 20 20 H 1.08995 * 109.47024 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46809 * 300.00152 * 1 2 3 22 22 H 1.09003 * 109.46631 * 60.00061 * 1 2 3 23 23 H 1.08997 * 109.47065 * 299.99997 * 3 2 1 24 24 H 1.09008 * 109.47165 * 59.99466 * 3 2 1 25 25 H 1.07998 * 119.99170 * 359.95363 * 7 6 4 26 26 H 1.07997 * 119.34616 * 180.02562 * 8 7 6 27 27 H 1.07995 * 119.37744 * 179.97438 * 9 8 7 28 28 H 1.08003 * 120.06477 * 179.97438 * 10 9 8 29 29 H 0.96994 * 119.99983 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0344 0.0909 0.0006 6 6 4.3436 2.3941 0.0002 7 6 3.7607 3.6580 -0.1185 8 6 4.5542 4.7873 -0.1171 9 6 5.9337 4.6988 0.0002 10 6 6.5623 3.4818 0.1200 11 6 5.8009 2.2971 0.1306 12 6 6.4272 1.0435 0.2582 13 1 5.9187 0.2345 0.7616 14 6 7.7133 0.8444 -0.2687 15 7 8.4138 -0.1958 0.0945 16 14 8.4220 2.0678 -1.4895 17 1 9.1623 3.1261 -0.7566 18 1 9.3483 1.3651 -2.4133 19 1 7.3190 2.6848 -2.2691 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6887 1.8463 -0.8900 24 1 1.6886 1.8464 0.8900 25 1 2.6888 3.7516 -0.2118 26 1 4.0920 5.7590 -0.2091 27 1 6.5247 5.6026 -0.0026 28 1 7.6376 3.4347 0.2098 29 1 9.3021 -0.3335 -0.2699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104523866.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:40 Heat of formation + Delta-G solvation = -82.263158 kcal Electronic energy + Delta-G solvation = -14471.856186 eV Core-core repulsion = 11938.247033 eV Total energy + Delta-G solvation = -2533.609153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49430 -38.82909 -37.91930 -35.69692 -32.54707 -32.12136 -29.54767 -27.43077 -26.49059 -23.95800 -22.73342 -20.52966 -19.46363 -17.88485 -17.21935 -17.14392 -16.97963 -16.13177 -15.81924 -15.44638 -14.96591 -14.77197 -14.36823 -14.01720 -13.83139 -13.30140 -12.94949 -12.73260 -12.59723 -12.27151 -12.15407 -11.93209 -11.64271 -11.05131 -10.68777 -10.09981 -9.56974 -9.40758 -8.98291 -6.57852 0.13834 0.84194 1.20915 1.35132 1.44605 1.88582 2.05522 2.59172 2.66588 3.46876 3.69337 4.17038 4.30200 4.39083 4.39979 4.54378 4.59915 4.61712 4.76398 4.84290 4.91845 4.98242 5.23579 5.51442 5.70748 5.83346 5.96594 6.18594 6.22888 6.34191 6.67898 6.72499 7.16558 8.05130 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.010370 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.125097 B = 2699.577253 C = 3487.264572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.416 6.416 3 C 0.029 3.971 4 C 0.373 3.627 5 O -0.502 6.502 6 C -0.311 4.311 7 C -0.021 4.021 8 C -0.247 4.247 9 C -0.050 4.050 10 C -0.265 4.265 11 C 0.097 3.903 12 C -0.439 4.439 13 H 0.067 0.933 14 C 0.038 3.962 15 N -0.828 5.828 16 Si 0.976 3.024 17 H -0.243 1.243 18 H -0.275 1.275 19 H -0.254 1.254 20 H 0.093 0.907 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.103 0.897 25 H 0.148 0.852 26 H 0.142 0.858 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 9.510 -2.407 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.335 6.335 3 C -0.047 4.047 4 C 0.257 3.743 5 O -0.383 6.383 6 C -0.313 4.313 7 C -0.039 4.039 8 C -0.265 4.265 9 C -0.068 4.068 10 C -0.284 4.284 11 C 0.094 3.906 12 C -0.466 4.466 13 H 0.085 0.915 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.798 3.202 17 H -0.167 1.167 18 H -0.201 1.201 19 H -0.178 1.178 20 H 0.111 0.889 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.123 0.877 24 H 0.120 0.880 25 H 0.166 0.834 26 H 0.160 0.840 27 H 0.152 0.848 28 H 0.122 0.878 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.195 8.552 -2.371 12.779 hybrid contribution 0.458 -0.173 -0.126 0.505 sum -8.737 8.379 -2.498 12.360 Atomic orbital electron populations 1.23034 0.78768 1.03948 1.01564 1.87993 1.22139 1.27657 1.95745 1.22855 0.91634 0.86002 1.04246 1.22545 0.90820 0.88418 0.72558 1.90512 1.76826 1.31440 1.39518 1.21184 0.93435 0.94246 1.22444 1.21390 0.99947 0.90474 0.92073 1.20840 0.93193 0.98610 1.13899 1.21184 0.95807 0.96373 0.93441 1.21260 0.98777 0.93191 1.15163 1.18953 0.91834 0.92640 0.87203 1.19943 0.98692 0.98325 1.29641 0.91540 1.27267 0.95407 0.97630 0.97633 1.69590 1.11344 1.27907 1.36440 0.85391 0.78765 0.77987 0.78068 1.16721 1.20086 1.17807 0.88860 0.92334 0.92181 0.87693 0.87978 0.83441 0.83981 0.84817 0.87825 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 11.01 113.37 1.25 1.75 15 2 O -0.42 -15.02 10.24 -129.95 -1.33 -16.35 15 3 C 0.03 0.96 5.12 71.24 0.36 1.33 15 4 C 0.37 17.50 7.15 27.87 0.20 17.70 15 5 O -0.50 -29.32 13.93 15.80 0.22 -29.10 15 6 C -0.31 -14.38 6.06 -18.55 -0.11 -14.50 15 7 C -0.02 -0.73 9.47 22.57 0.21 -0.52 15 8 C -0.25 -8.18 9.98 22.34 0.22 -7.95 15 9 C -0.05 -1.85 9.97 22.21 0.22 -1.62 15 10 C -0.27 -12.17 7.23 22.73 0.16 -12.01 15 11 C 0.10 5.14 5.25 -19.85 -0.10 5.04 15 12 C -0.44 -26.38 8.41 23.40 0.20 -26.18 15 13 H 0.07 4.56 6.15 -2.91 -0.02 4.54 15 14 C 0.04 2.11 5.45 85.41 0.47 2.58 15 15 N -0.83 -47.19 13.91 21.90 0.30 -46.89 15 16 Si 0.98 43.24 24.54 68.60 1.68 44.92 15 17 H -0.24 -9.70 6.52 99.48 0.65 -9.06 15 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 19 H -0.25 -11.51 6.98 99.48 0.69 -10.82 15 20 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 15 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 15 23 H 0.11 2.73 7.93 -2.39 -0.02 2.71 15 24 H 0.10 2.73 8.14 -2.38 -0.02 2.71 15 25 H 0.15 3.74 7.02 -2.91 -0.02 3.72 15 26 H 0.14 3.52 8.06 -2.91 -0.02 3.49 15 27 H 0.13 3.92 8.06 -2.91 -0.02 3.90 15 28 H 0.10 4.71 4.66 -2.91 -0.01 4.70 15 29 H 0.30 15.06 8.29 -92.71 -0.77 14.29 15 Total: -1.00 -73.33 251.05 5.04 -68.28 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.09 Total: 13.52 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 3.08 Total: -34.39 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.30 Total: -46.89 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.11 Total: -45.45 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.68 Total: 44.92 kcal Total: -73.33 5.04 -68.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104523866.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.978 kcal (2) G-P(sol) polarization free energy of solvation -73.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds