Wall clock time and date at job start Mon Mar 30 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46903 * 2 1 4 4 C 1.50708 * 109.46841 * 240.00475 * 2 1 3 5 5 O 1.20826 * 119.99428 * 239.99813 * 4 2 1 6 6 O 1.34227 * 120.00269 * 59.99709 * 4 2 1 7 7 C 1.50696 * 109.47232 * 120.00350 * 2 1 3 8 8 C 1.38637 * 119.75107 * 59.72569 * 7 2 1 9 9 C 1.37616 * 120.24766 * 179.72345 * 8 7 2 10 10 C 1.40718 * 119.74200 * 0.52344 * 9 8 7 11 11 C 1.41394 * 120.23993 * 179.72740 * 10 9 8 12 12 H 1.08004 * 120.00692 * 24.41239 * 11 10 9 13 13 C 1.39953 * 120.00024 * 204.41187 * 11 10 9 14 14 N 1.30824 * 119.99653 * 17.85992 * 13 11 10 15 15 Si 1.86797 * 120.00252 * 197.85644 * 13 11 10 16 16 H 1.48500 * 109.46922 * 59.99597 * 15 13 11 17 17 H 1.48500 * 109.47374 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46981 * 300.00007 * 15 13 11 19 19 C 1.40712 * 119.51339 * 359.74992 * 10 9 8 20 20 C 1.37618 * 119.74325 * 0.02562 * 19 10 9 21 21 H 1.09004 * 109.47490 * 59.99916 * 1 2 3 22 22 H 1.09002 * 109.47130 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46865 * 299.99639 * 1 2 3 24 24 H 0.96698 * 117.00118 * 179.97438 * 6 4 2 25 25 H 1.08005 * 119.87491 * 359.97438 * 8 7 2 26 26 H 1.08004 * 120.12968 * 180.27791 * 9 8 7 27 27 H 0.96994 * 120.00031 * 180.02562 * 14 13 11 28 28 H 1.08001 * 120.12773 * 179.97438 * 19 10 9 29 29 H 1.08007 * 119.86960 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7269 -1.6927 -1.1197 6 8 1.7080 -0.2517 -2.4497 7 6 2.0323 -0.7105 1.2304 8 6 1.6896 -2.0361 1.4474 9 6 2.1473 -2.6965 2.5647 10 6 2.9571 -2.0177 3.4940 11 6 3.4284 -2.6843 4.6485 12 1 3.5222 -3.7603 4.6504 13 6 3.7735 -1.9499 5.7887 14 7 3.3471 -0.7211 5.9291 15 14 4.8427 -2.7242 7.1103 16 1 6.1507 -3.1125 6.5242 17 1 5.0614 -1.7461 8.2061 18 1 4.1654 -3.9299 7.6515 19 6 3.2939 -0.6706 3.2662 20 6 2.8286 -0.0316 2.1397 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.0540 -0.7404 -3.2090 25 1 1.0643 -2.5537 0.7350 26 1 1.8828 -3.7306 2.7296 27 1 3.5865 -0.2119 6.7191 28 1 3.9144 -0.1400 3.9732 29 1 3.0855 1.0025 1.9631 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115147956.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:27 Heat of formation + Delta-G solvation = -88.021278 kcal Electronic energy + Delta-G solvation = -14353.514998 eV Core-core repulsion = 11819.656154 eV Total energy + Delta-G solvation = -2533.858844 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.97832 -37.59576 -35.68964 -34.34132 -32.62145 -29.48309 -28.81630 -25.46386 -24.21697 -21.60608 -20.87939 -19.37850 -17.57743 -17.29432 -16.08789 -15.33676 -15.20364 -14.52094 -13.86339 -13.51300 -12.94528 -12.73901 -12.34142 -11.94369 -11.91754 -11.49128 -11.34004 -11.14424 -11.06043 -10.84897 -10.46816 -10.42486 -9.94015 -9.56887 -9.37069 -9.11342 -7.44426 -7.28861 -6.76977 -4.34925 2.67516 2.70683 3.06316 3.08477 3.11936 3.14651 3.62177 3.93089 4.62188 5.33121 5.43229 5.54415 5.80891 5.91374 6.16219 6.18442 6.38653 6.40883 6.47628 6.82587 6.96209 7.07510 7.28270 7.37722 7.62199 7.84917 8.05934 8.09716 8.30379 8.33963 8.64151 8.89971 8.98239 10.17610 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.061095 B = 0.006666 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.189652 B = 4199.462325 C = 4322.847084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.014 4.014 3 H 0.098 0.902 4 C 0.472 3.528 5 O -0.500 6.500 6 O -0.527 6.527 7 C -0.214 4.214 8 C -0.055 4.055 9 C -0.228 4.228 10 C 0.116 3.884 11 C -0.462 4.462 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.792 5.792 15 Si 0.908 3.092 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.265 1.265 19 C -0.168 4.168 20 C -0.089 4.089 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.399 0.601 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.281 0.719 28 H 0.119 0.881 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 2.730 -7.461 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.033 4.033 3 H 0.116 0.884 4 C 0.314 3.686 5 O -0.385 6.385 6 O -0.339 6.339 7 C -0.215 4.215 8 C -0.073 4.073 9 C -0.248 4.248 10 C 0.113 3.887 11 C -0.491 4.491 12 H 0.096 0.904 13 C -0.141 4.141 14 N -0.417 5.417 15 Si 0.733 3.267 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.188 4.188 20 C -0.107 4.107 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.256 0.744 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.136 0.864 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.641 2.864 -6.893 7.918 hybrid contribution 0.731 -0.640 0.128 0.980 sum -1.910 2.224 -6.765 7.374 Atomic orbital electron populations 1.21776 0.92900 1.02465 1.02179 1.19639 0.96830 0.99106 0.87730 0.88405 1.24158 0.77211 0.83034 0.84232 1.90718 1.35047 1.25885 1.86871 1.84588 1.72815 1.59382 1.17107 1.18447 1.10676 0.95467 0.96919 1.20185 0.98065 0.93339 0.95747 1.20936 1.05715 0.99382 0.98731 1.17631 0.87792 0.91939 0.91308 1.19597 1.38207 0.94973 0.96329 0.90440 1.25919 0.94223 0.94598 0.99394 1.69817 1.34461 1.09987 1.27434 0.86369 0.81133 0.79754 0.79478 1.18804 1.20329 1.18997 1.21251 1.04010 0.96281 0.97230 1.20485 0.97826 0.97283 0.95111 0.92445 0.92435 0.91090 0.74405 0.89922 0.89033 0.90806 0.86358 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.93 37.16 0.33 -1.67 15 2 C -0.01 -0.24 3.00 -92.92 -0.28 -0.52 15 3 H 0.10 1.53 7.86 -51.93 -0.41 1.12 15 4 C 0.47 8.17 7.49 36.01 0.27 8.44 15 5 O -0.50 -10.54 15.88 -18.75 -0.30 -10.83 15 6 O -0.53 -6.90 13.33 -39.25 -0.52 -7.43 15 7 C -0.21 -4.70 4.42 -104.33 -0.46 -5.16 15 8 C -0.06 -1.29 7.90 -39.66 -0.31 -1.60 15 9 C -0.23 -5.82 9.80 -38.87 -0.38 -6.20 15 10 C 0.12 3.15 5.58 -106.83 -0.60 2.56 15 11 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 15 12 H 0.08 2.01 7.91 -52.48 -0.41 1.60 15 13 C 0.08 1.93 5.14 -17.34 -0.09 1.85 15 14 N -0.79 -20.44 10.95 55.55 0.61 -19.84 15 15 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 15 16 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 19 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 15 20 C -0.09 -2.07 9.64 -39.66 -0.38 -2.45 15 21 H 0.06 0.71 8.11 -51.93 -0.42 0.29 15 22 H 0.06 0.87 7.35 -51.93 -0.38 0.49 15 23 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.40 3.47 9.10 45.56 0.41 3.88 15 25 H 0.08 1.79 7.49 -52.48 -0.39 1.40 15 26 H 0.09 2.22 8.06 -52.48 -0.42 1.79 15 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 15 28 H 0.12 3.18 6.16 -52.49 -0.32 2.86 15 29 H 0.09 1.80 7.93 -52.48 -0.42 1.38 15 LS Contribution 257.13 15.07 3.87 3.87 Total: -1.00 -30.07 257.13 -6.27 -36.34 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -2.32 Total: 6.46 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -2.58 Total: -22.32 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.61 Total: -19.84 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.82 Total: -18.26 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.07 -6.27 -36.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115147956.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.680 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds