Wall clock time and date at job start Mon Mar 30 2020 02:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46903 * 2 1 4 4 C 1.50708 * 109.46841 * 240.00475 * 2 1 3 5 5 O 1.20826 * 119.99428 * 239.99813 * 4 2 1 6 6 O 1.34227 * 120.00269 * 59.99709 * 4 2 1 7 7 C 1.50696 * 109.47232 * 120.00350 * 2 1 3 8 8 C 1.38637 * 119.75107 * 59.72569 * 7 2 1 9 9 C 1.37616 * 120.24766 * 179.72345 * 8 7 2 10 10 C 1.40718 * 119.74200 * 0.52344 * 9 8 7 11 11 C 1.41394 * 120.23993 * 179.72740 * 10 9 8 12 12 H 1.08004 * 120.00692 * 24.41239 * 11 10 9 13 13 C 1.39953 * 120.00024 * 204.41187 * 11 10 9 14 14 N 1.30824 * 119.99653 * 17.85992 * 13 11 10 15 15 Si 1.86797 * 120.00252 * 197.85644 * 13 11 10 16 16 H 1.48500 * 109.46922 * 59.99597 * 15 13 11 17 17 H 1.48500 * 109.47374 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46981 * 300.00007 * 15 13 11 19 19 C 1.40712 * 119.51339 * 359.74992 * 10 9 8 20 20 C 1.37618 * 119.74325 * 0.02562 * 19 10 9 21 21 H 1.09004 * 109.47490 * 59.99916 * 1 2 3 22 22 H 1.09002 * 109.47130 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46865 * 299.99639 * 1 2 3 24 24 H 0.96698 * 117.00118 * 179.97438 * 6 4 2 25 25 H 1.08005 * 119.87491 * 359.97438 * 8 7 2 26 26 H 1.08004 * 120.12968 * 180.27791 * 9 8 7 27 27 H 0.96994 * 120.00031 * 180.02562 * 14 13 11 28 28 H 1.08001 * 120.12773 * 179.97438 * 19 10 9 29 29 H 1.08007 * 119.86960 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7269 -1.6927 -1.1197 6 8 1.7080 -0.2517 -2.4497 7 6 2.0323 -0.7105 1.2304 8 6 1.6896 -2.0361 1.4474 9 6 2.1473 -2.6965 2.5647 10 6 2.9571 -2.0177 3.4940 11 6 3.4284 -2.6843 4.6485 12 1 3.5222 -3.7603 4.6504 13 6 3.7735 -1.9499 5.7887 14 7 3.3471 -0.7211 5.9291 15 14 4.8427 -2.7242 7.1103 16 1 6.1507 -3.1125 6.5242 17 1 5.0614 -1.7461 8.2061 18 1 4.1654 -3.9299 7.6515 19 6 3.2939 -0.6706 3.2662 20 6 2.8286 -0.0316 2.1397 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.0540 -0.7404 -3.2090 25 1 1.0643 -2.5537 0.7350 26 1 1.8828 -3.7306 2.7296 27 1 3.5865 -0.2119 6.7191 28 1 3.9144 -0.1400 3.9732 29 1 3.0855 1.0025 1.9631 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115147956.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:26 Heat of formation + Delta-G solvation = -106.434473 kcal Electronic energy + Delta-G solvation = -14354.313454 eV Core-core repulsion = 11819.656154 eV Total energy + Delta-G solvation = -2534.657300 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36199 -39.37014 -36.99557 -36.06710 -34.28997 -31.35597 -30.64173 -27.15206 -25.66912 -23.29918 -22.70219 -20.97423 -19.24874 -18.85199 -17.54170 -17.02128 -16.70067 -16.08538 -15.64756 -15.20206 -14.48467 -14.29055 -13.91835 -13.80735 -13.28608 -13.08703 -12.94590 -12.73877 -12.58031 -12.37726 -12.23911 -12.01163 -11.49785 -11.28587 -11.18591 -10.98669 -9.36508 -9.21064 -8.64883 -6.34357 0.91065 1.16312 1.34345 1.37435 1.47972 1.51956 2.20452 2.29615 2.76866 3.73844 3.90044 4.15510 4.36566 4.48529 4.53543 4.69747 4.93827 4.97575 5.06858 5.15941 5.31668 5.37661 5.46605 5.69656 5.70501 5.95249 6.09441 6.19294 6.38749 6.69067 6.93590 7.02623 7.13972 8.32357 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.061095 B = 0.006666 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.189652 B = 4199.462325 C = 4322.847084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.019 4.019 3 H 0.123 0.877 4 C 0.484 3.516 5 O -0.546 6.546 6 O -0.508 6.508 7 C -0.201 4.201 8 C -0.059 4.059 9 C -0.251 4.251 10 C 0.082 3.918 11 C -0.504 4.504 12 H 0.072 0.928 13 C 0.037 3.963 14 N -0.821 5.821 15 Si 0.982 3.018 16 H -0.263 1.263 17 H -0.264 1.264 18 H -0.260 1.260 19 C -0.193 4.193 20 C -0.094 4.094 21 H 0.088 0.912 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.422 0.578 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.289 0.711 28 H 0.104 0.896 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 3.782 -8.614 9.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.038 4.038 3 H 0.141 0.859 4 C 0.327 3.673 5 O -0.435 6.435 6 O -0.321 6.321 7 C -0.202 4.202 8 C -0.077 4.077 9 C -0.271 4.271 10 C 0.080 3.920 11 C -0.533 4.533 12 H 0.090 0.910 13 C -0.178 4.178 14 N -0.447 5.447 15 Si 0.803 3.197 16 H -0.187 1.187 17 H -0.188 1.188 18 H -0.184 1.184 19 C -0.213 4.213 20 C -0.112 4.112 21 H 0.107 0.893 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.283 0.717 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.098 3.936 -8.093 9.517 hybrid contribution 0.772 -0.887 0.271 1.207 sum -2.325 3.049 -7.821 8.711 Atomic orbital electron populations 1.21748 0.90524 1.02578 1.03898 1.19706 0.98669 0.99624 0.85798 0.85878 1.23904 0.76095 0.81976 0.85322 1.90728 1.37241 1.27909 1.87667 1.84499 1.72065 1.58980 1.16582 1.18909 1.08289 0.94946 0.98047 1.20428 0.97946 0.94186 0.95190 1.21135 1.06431 0.99764 0.99751 1.17974 0.88896 0.92894 0.92227 1.19824 1.40815 0.95055 0.97649 0.91013 1.26737 0.94835 0.95036 1.01172 1.69856 1.35154 1.11171 1.28510 0.85261 0.78813 0.79065 0.76603 1.18738 1.18781 1.18427 1.21263 1.05195 0.96326 0.98474 1.20842 0.97335 0.98721 0.94297 0.89290 0.93151 0.90884 0.71657 0.88279 0.89093 0.89991 0.87831 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.93 71.98 0.64 -2.72 15 2 C -0.02 -0.60 3.00 -12.28 -0.04 -0.64 15 3 H 0.12 3.31 7.86 -2.39 -0.02 3.29 15 4 C 0.48 15.24 7.49 71.24 0.53 15.78 15 5 O -0.55 -22.11 15.88 21.96 0.35 -21.77 15 6 O -0.51 -11.13 13.33 -51.38 -0.68 -11.81 15 7 C -0.20 -8.56 4.42 -19.68 -0.09 -8.65 15 8 C -0.06 -2.76 7.90 22.22 0.18 -2.59 15 9 C -0.25 -13.24 9.80 22.73 0.22 -13.02 15 10 C 0.08 4.66 5.58 -21.29 -0.12 4.54 15 11 C -0.50 -28.36 9.05 23.46 0.21 -28.15 15 12 H 0.07 3.93 7.91 -2.91 -0.02 3.90 15 13 C 0.04 1.93 5.14 85.26 0.44 2.37 15 14 N -0.82 -43.39 10.95 21.83 0.24 -43.15 15 15 Si 0.98 39.01 29.60 68.60 2.03 41.04 15 16 H -0.26 -10.32 7.11 99.48 0.71 -9.62 15 17 H -0.26 -9.74 7.11 99.48 0.71 -9.04 15 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 19 C -0.19 -10.42 8.70 22.73 0.20 -10.22 15 20 C -0.09 -4.33 9.64 22.22 0.21 -4.11 15 21 H 0.09 1.77 8.11 -2.38 -0.02 1.75 15 22 H 0.05 1.37 7.35 -2.39 -0.02 1.35 15 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.42 5.58 9.10 -74.06 -0.67 4.91 15 25 H 0.10 4.21 7.49 -2.91 -0.02 4.19 15 26 H 0.09 4.61 8.06 -2.91 -0.02 4.59 15 27 H 0.29 13.74 8.30 -92.71 -0.77 12.97 15 28 H 0.10 5.78 6.16 -2.91 -0.02 5.76 15 29 H 0.12 4.60 7.93 -2.91 -0.02 4.58 15 Total: -1.00 -66.73 257.13 4.82 -61.90 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.49 Total: 21.18 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 2.40 Total: -47.40 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.24 Total: -43.15 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.34 Total: -33.58 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -66.73 4.82 -61.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115147956.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.531 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds