Wall clock time and date at job start Mon Mar 30 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21250 * 120.00089 * 2 1 4 4 C 1.47166 * 120.00195 * 179.97438 * 2 1 3 5 5 C 1.39852 * 120.17527 * 179.97438 * 4 2 1 6 6 C 1.37882 * 119.82577 * 179.97438 * 5 4 2 7 7 C 1.38397 * 120.17524 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.82776 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47545 * 340.00148 * 8 7 6 10 10 O 1.42905 * 109.47588 * 219.99528 * 8 7 6 11 11 C 1.50706 * 109.47259 * 99.99807 * 8 7 6 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.38403 * 120.34818 * 0.27315 * 7 6 5 20 20 C 1.37893 * 120.17317 * 359.49386 * 19 7 6 21 21 H 1.09000 * 109.47042 * 239.99802 * 1 2 3 22 22 H 1.09000 * 109.47248 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47406 * 119.99987 * 1 2 3 24 24 H 1.08005 * 120.08692 * 359.96038 * 5 4 2 25 25 H 1.08002 * 119.91364 * 179.97438 * 6 5 4 26 26 H 0.96693 * 113.99902 * 300.00817 * 10 8 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 28 28 H 1.08000 * 119.91470 * 179.72450 * 19 7 6 29 29 H 1.07991 * 120.09096 * 180.27525 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 3.6413 -1.2787 0.0000 6 6 4.3235 -2.4770 0.0011 7 6 3.6279 -3.6734 0.0032 8 6 4.3814 -4.9785 0.0038 9 1 5.3990 -4.8108 -0.3490 10 8 3.7247 -5.9082 -0.8603 11 6 4.4206 -5.5354 1.4037 12 1 3.9468 -4.9981 2.2120 13 6 5.0612 -6.7306 1.6525 14 7 5.6385 -7.3846 0.6683 15 14 5.1103 -7.4204 3.3877 16 1 5.8527 -8.7065 3.3883 17 1 5.7926 -6.4540 4.2855 18 1 3.7242 -7.6494 3.8688 19 6 2.2439 -3.6777 -0.0014 20 6 1.5471 -2.4877 0.0024 21 1 -0.3633 -0.5139 0.8900 22 1 -0.3634 1.0276 0.0005 23 1 -0.3634 -0.5138 -0.8899 24 1 4.1856 -0.3458 -0.0015 25 1 5.4035 -2.4819 0.0003 26 1 2.8129 -6.1050 -0.6060 27 1 5.6133 -7.0261 -0.2327 28 1 1.7082 -4.6154 -0.0042 29 1 0.4672 -2.4926 0.0033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138994452.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:20 Heat of formation + Delta-G solvation = -78.877372 kcal Electronic energy + Delta-G solvation = -14202.395998 eV Core-core repulsion = 11668.933664 eV Total energy + Delta-G solvation = -2533.462334 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.76893 -38.23048 -35.80909 -32.29964 -31.87242 -30.54663 -29.49846 -26.44947 -23.68633 -22.28113 -21.37683 -19.51470 -17.41221 -17.05536 -15.77572 -15.46583 -14.91199 -14.49288 -14.08948 -13.84355 -13.43652 -13.21342 -12.75829 -12.55808 -12.37785 -12.22863 -12.01389 -11.59622 -10.86885 -10.69392 -10.32049 -10.18478 -9.77281 -9.55428 -8.71956 -8.61992 -8.52236 -8.01484 -6.48079 -4.34422 0.97930 1.76528 2.65298 3.36589 3.37431 3.56861 4.16992 4.18792 4.43742 4.97650 5.13461 5.20485 5.25402 5.32050 5.39248 5.56165 5.70910 5.80213 5.91780 5.94871 6.27228 6.30620 6.61354 6.77024 6.78262 7.28164 7.38654 7.62159 7.78054 8.21316 8.71082 8.88110 9.50489 10.90808 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.045461 B = 0.006623 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.763937 B = 4226.886655 C = 4325.277521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.399 3.601 3 O -0.473 6.473 4 C -0.205 4.205 5 C -0.059 4.059 6 C -0.137 4.137 7 C -0.025 4.025 8 C 0.236 3.764 9 H 0.064 0.936 10 O -0.576 6.576 11 C -0.643 4.643 12 H 0.053 0.947 13 C 0.037 3.963 14 N -0.887 5.887 15 Si 1.069 2.931 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.286 1.286 19 C -0.131 4.131 20 C -0.071 4.071 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.355 0.645 27 H 0.285 0.715 28 H 0.125 0.875 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 8.694 -0.757 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.279 3.721 3 O -0.350 6.350 4 C -0.206 4.206 5 C -0.077 4.077 6 C -0.155 4.155 7 C -0.025 4.025 8 C 0.179 3.821 9 H 0.082 0.918 10 O -0.381 6.381 11 C -0.681 4.681 12 H 0.071 0.929 13 C -0.173 4.173 14 N -0.521 5.521 15 Si 0.896 3.104 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.149 4.149 20 C -0.090 4.090 21 H 0.111 0.889 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.201 0.799 27 H 0.096 0.904 28 H 0.143 0.857 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.581 7.997 -0.185 11.020 hybrid contribution -1.119 1.247 -0.484 1.744 sum -8.700 9.244 -0.670 12.711 Atomic orbital electron populations 1.22232 0.94283 1.04601 1.04482 1.22483 0.91437 0.87787 0.70394 1.90493 1.72307 1.34519 1.37723 1.20267 0.94585 0.94259 1.11462 1.21305 0.93109 0.98246 0.95059 1.21031 1.00323 0.91618 1.02561 1.21516 0.94510 0.97774 0.88742 1.18799 0.90943 0.81244 0.91101 0.91820 1.86546 1.29646 1.65742 1.56153 1.22306 1.42463 1.10244 0.93045 0.92886 1.25863 0.92183 0.93751 1.05456 1.70653 1.38908 1.39805 1.02720 0.83564 0.76577 0.76389 0.73855 1.20604 1.21299 1.21271 1.20892 0.94148 0.97763 1.02111 1.21309 0.99322 0.91610 0.96712 0.88944 0.90116 0.88977 0.85687 0.85745 0.79876 0.90361 0.85708 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 8.93 36.00 0.32 -1.59 15 2 C 0.40 5.69 7.23 -30.69 -0.22 5.47 15 3 O -0.47 -8.15 17.08 5.58 0.10 -8.05 15 4 C -0.20 -3.23 5.87 -105.06 -0.62 -3.85 15 5 C -0.06 -1.01 9.60 -39.11 -0.38 -1.39 15 6 C -0.14 -2.59 9.64 -39.65 -0.38 -2.97 15 7 C -0.02 -0.51 4.92 -104.50 -0.51 -1.02 15 8 C 0.24 5.72 2.66 -29.03 -0.08 5.64 15 9 H 0.06 1.65 7.86 -51.93 -0.41 1.25 15 10 O -0.58 -13.81 11.87 -35.23 -0.42 -14.23 15 11 C -0.64 -17.17 8.74 -34.44 -0.30 -17.48 15 12 H 0.05 1.42 7.74 -52.48 -0.41 1.02 15 13 C 0.04 1.01 5.40 -17.82 -0.10 0.92 15 14 N -0.89 -26.10 13.53 55.43 0.75 -25.35 15 15 Si 1.07 24.18 29.90 -169.99 -5.08 19.10 15 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 17 H -0.29 -6.25 7.11 56.52 0.40 -5.85 15 18 H -0.29 -6.17 7.11 56.52 0.40 -5.77 15 19 C -0.13 -2.32 9.29 -39.65 -0.37 -2.68 15 20 C -0.07 -1.06 9.47 -39.10 -0.37 -1.43 15 21 H 0.09 0.75 8.09 -51.93 -0.42 0.33 15 22 H 0.08 0.72 8.12 -51.93 -0.42 0.30 15 23 H 0.09 0.72 8.09 -51.93 -0.42 0.30 15 24 H 0.13 2.00 7.65 -52.48 -0.40 1.60 15 25 H 0.12 2.23 8.03 -52.49 -0.42 1.81 15 26 H 0.36 7.45 7.47 45.56 0.34 7.79 15 27 H 0.28 8.49 6.47 -40.82 -0.26 8.22 15 28 H 0.13 2.05 6.76 -52.49 -0.35 1.69 15 29 H 0.12 1.37 7.05 -52.49 -0.37 1.00 15 LS Contribution 258.78 15.07 3.90 3.90 Total: -1.00 -31.21 258.78 -6.10 -37.31 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -2.34 Total: 7.70 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -3.00 Total: -20.38 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.75 Total: -25.35 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.32 Total: -22.28 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.10 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.21 -6.10 -37.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138994452.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.570 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds