Wall clock time and date at job start Mon Mar 30 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21250 * 120.00089 * 2 1 4 4 C 1.47166 * 120.00195 * 179.97438 * 2 1 3 5 5 C 1.39852 * 120.17527 * 179.97438 * 4 2 1 6 6 C 1.37882 * 119.82577 * 179.97438 * 5 4 2 7 7 C 1.38397 * 120.17524 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.82776 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47545 * 340.00148 * 8 7 6 10 10 O 1.42905 * 109.47588 * 219.99528 * 8 7 6 11 11 C 1.50706 * 109.47259 * 99.99807 * 8 7 6 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.38403 * 120.34818 * 0.27315 * 7 6 5 20 20 C 1.37893 * 120.17317 * 359.49386 * 19 7 6 21 21 H 1.09000 * 109.47042 * 239.99802 * 1 2 3 22 22 H 1.09000 * 109.47248 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47406 * 119.99987 * 1 2 3 24 24 H 1.08005 * 120.08692 * 359.96038 * 5 4 2 25 25 H 1.08002 * 119.91364 * 179.97438 * 6 5 4 26 26 H 0.96693 * 113.99902 * 300.00817 * 10 8 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 28 28 H 1.08000 * 119.91470 * 179.72450 * 19 7 6 29 29 H 1.07991 * 120.09096 * 180.27525 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 3.6413 -1.2787 0.0000 6 6 4.3235 -2.4770 0.0011 7 6 3.6279 -3.6734 0.0032 8 6 4.3814 -4.9785 0.0038 9 1 5.3990 -4.8108 -0.3490 10 8 3.7247 -5.9082 -0.8603 11 6 4.4206 -5.5354 1.4037 12 1 3.9468 -4.9981 2.2120 13 6 5.0612 -6.7306 1.6525 14 7 5.6385 -7.3846 0.6683 15 14 5.1103 -7.4204 3.3877 16 1 5.8527 -8.7065 3.3883 17 1 5.7926 -6.4540 4.2855 18 1 3.7242 -7.6494 3.8688 19 6 2.2439 -3.6777 -0.0014 20 6 1.5471 -2.4877 0.0024 21 1 -0.3633 -0.5139 0.8900 22 1 -0.3634 1.0276 0.0005 23 1 -0.3634 -0.5138 -0.8899 24 1 4.1856 -0.3458 -0.0015 25 1 5.4035 -2.4819 0.0003 26 1 2.8129 -6.1050 -0.6060 27 1 5.6133 -7.0261 -0.2327 28 1 1.7082 -4.6154 -0.0042 29 1 0.4672 -2.4926 0.0033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138994452.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:20 Heat of formation + Delta-G solvation = -99.902947 kcal Electronic energy + Delta-G solvation = -14203.307735 eV Core-core repulsion = 11668.933664 eV Total energy + Delta-G solvation = -2534.374072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.04996 -39.63545 -37.57223 -34.37386 -33.18781 -31.93668 -30.60677 -28.20030 -25.44236 -23.65245 -22.94122 -20.76516 -19.44372 -18.46367 -17.28521 -16.79970 -16.00376 -15.98164 -15.66046 -15.46112 -15.02966 -14.58062 -14.53722 -14.24069 -13.72399 -13.28126 -13.01591 -12.95635 -12.63389 -12.30774 -12.00841 -11.94870 -11.52181 -10.80787 -10.70305 -10.38092 -9.96933 -9.66082 -8.64686 -6.52705 -0.31429 0.41276 1.42569 1.54127 1.60232 1.80389 2.53535 2.83160 3.11963 3.12178 3.79859 3.90634 3.98715 4.07850 4.18423 4.38814 4.45432 4.64981 4.69753 4.84782 4.93102 5.12051 5.14665 5.28193 5.43133 5.68300 5.80282 5.92080 6.07122 6.50282 6.52379 7.06343 7.42262 8.71283 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.045461 B = 0.006623 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.763937 B = 4226.886655 C = 4325.277521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.401 3.599 3 O -0.508 6.508 4 C -0.204 4.204 5 C -0.068 4.068 6 C -0.151 4.151 7 C -0.056 4.056 8 C 0.238 3.762 9 H 0.030 0.970 10 O -0.586 6.586 11 C -0.647 4.647 12 H 0.050 0.950 13 C -0.013 4.013 14 N -0.917 5.917 15 Si 1.116 2.884 16 H -0.285 1.285 17 H -0.274 1.274 18 H -0.265 1.265 19 C -0.137 4.137 20 C -0.050 4.050 21 H 0.116 0.884 22 H 0.088 0.912 23 H 0.118 0.882 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.368 0.632 27 H 0.269 0.731 28 H 0.137 0.863 29 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 9.607 0.130 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.283 3.717 3 O -0.388 6.388 4 C -0.205 4.205 5 C -0.086 4.086 6 C -0.169 4.169 7 C -0.057 4.057 8 C 0.181 3.819 9 H 0.048 0.952 10 O -0.393 6.393 11 C -0.684 4.684 12 H 0.068 0.932 13 C -0.216 4.216 14 N -0.552 5.552 15 Si 0.937 3.063 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.190 1.190 19 C -0.155 4.155 20 C -0.068 4.068 21 H 0.135 0.865 22 H 0.107 0.893 23 H 0.136 0.864 24 H 0.148 0.852 25 H 0.135 0.865 26 H 0.215 0.785 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.483 8.924 0.695 13.784 hybrid contribution -0.276 1.075 -0.817 1.378 sum -10.758 9.999 -0.122 14.688 Atomic orbital electron populations 1.22275 0.89742 1.06078 1.06727 1.23063 0.93654 0.86185 0.68799 1.90498 1.73542 1.35403 1.39337 1.20717 0.94132 0.96000 1.09669 1.21426 0.94385 0.97569 0.95232 1.21022 1.00266 0.92097 1.03540 1.21212 0.95939 0.96095 0.92422 1.18501 0.90328 0.83314 0.89722 0.95219 1.86480 1.30632 1.66096 1.56051 1.22603 1.41514 1.10074 0.94189 0.93191 1.27314 0.91407 0.94492 1.08349 1.70788 1.41243 1.40711 1.02491 0.82964 0.77742 0.75750 0.69859 1.21017 1.19921 1.18996 1.21096 0.92896 0.99643 1.01895 1.21718 1.01588 0.89656 0.93794 0.86528 0.89318 0.86369 0.85194 0.86492 0.78469 0.92096 0.84570 0.80691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 8.93 71.23 0.64 -2.02 15 2 C 0.40 10.09 7.23 28.03 0.20 10.30 15 3 O -0.51 -16.53 17.08 -2.94 -0.05 -16.58 15 4 C -0.20 -5.89 5.87 -20.15 -0.12 -6.01 15 5 C -0.07 -2.29 9.60 22.58 0.22 -2.08 15 6 C -0.15 -5.84 9.64 22.22 0.21 -5.62 15 7 C -0.06 -2.32 4.92 -19.79 -0.10 -2.42 15 8 C 0.24 11.97 2.66 29.10 0.08 12.05 15 9 H 0.03 1.66 7.86 -2.39 -0.02 1.65 15 10 O -0.59 -28.81 11.87 -148.98 -1.77 -30.57 15 11 C -0.65 -35.06 8.74 25.60 0.22 -34.84 15 12 H 0.05 2.68 7.74 -2.91 -0.02 2.66 15 13 C -0.01 -0.73 5.40 84.65 0.46 -0.27 15 14 N -0.92 -55.44 13.53 21.45 0.29 -55.15 15 15 Si 1.12 48.45 29.90 68.60 2.05 50.51 15 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 17 H -0.27 -11.22 7.11 99.48 0.71 -10.52 15 18 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 19 C -0.14 -4.58 9.29 22.23 0.21 -4.38 15 20 C -0.05 -1.28 9.47 22.58 0.21 -1.07 15 21 H 0.12 1.15 8.09 -2.39 -0.02 1.13 15 22 H 0.09 1.17 8.12 -2.39 -0.02 1.15 15 23 H 0.12 1.11 8.09 -2.39 -0.02 1.09 15 24 H 0.13 4.17 7.65 -2.91 -0.02 4.15 15 25 H 0.12 4.49 8.03 -2.91 -0.02 4.47 15 26 H 0.37 15.50 7.47 -74.06 -0.55 14.95 15 27 H 0.27 16.73 6.47 -92.71 -0.60 16.13 15 28 H 0.14 4.15 6.76 -2.91 -0.02 4.13 15 29 H 0.18 2.71 7.05 -2.92 -0.02 2.69 15 Total: -1.00 -69.63 258.78 3.54 -66.09 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.78 Total: 22.08 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 2.23 Total: -36.37 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.29 Total: -55.15 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -1.82 Total: -47.16 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.51 kcal Total: -69.63 3.54 -66.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138994452.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.812 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds