Wall clock time and date at job start Mon Mar 30 2020 02:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48502 * 109.47028 * 240.00000 * 3 2 1 5 5 H 1.48499 * 109.46825 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46948 * 119.99907 * 3 2 1 7 7 C 1.37879 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00286 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.39674 * 119.99520 * 180.02562 * 10 9 7 12 12 C 1.38980 * 120.04108 * 359.95810 * 11 10 9 13 13 C 1.38135 * 120.06626 * 179.97438 * 12 11 10 14 14 C 1.38183 * 120.14373 * 0.04997 * 13 12 11 15 15 C 1.38909 * 120.07661 * 359.97438 * 14 13 12 16 16 N 1.39921 * 120.03107 * 180.02562 * 15 14 13 17 17 C 1.34773 * 119.99974 * 324.88167 * 16 15 14 18 18 O 1.21283 * 120.00298 * 4.61935 * 17 16 15 19 19 C 1.38758 * 119.93471 * 359.97438 * 15 14 13 20 20 H 0.96998 * 120.00125 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47167 * 60.00135 * 9 7 2 22 22 H 1.08996 * 109.47326 * 300.00124 * 9 7 2 23 23 H 0.96994 * 120.00426 * 0.02562 * 10 9 7 24 24 H 1.08007 * 119.96871 * 359.97438 * 12 11 10 25 25 H 1.08002 * 119.93060 * 180.02562 * 13 12 11 26 26 H 1.07997 * 119.95962 * 179.97438 * 14 13 12 27 27 H 0.97005 * 119.99926 * 144.88482 * 16 15 14 28 28 H 1.08005 * 119.99946 * 184.61557 * 17 16 15 29 29 H 1.07999 * 120.07311 * 179.72466 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7375 -4.9295 -0.0011 12 6 0.3713 -5.1844 -0.0007 13 6 -0.0897 -6.4866 -0.0018 14 6 0.8051 -7.5395 -0.0022 15 6 2.1719 -7.2916 -0.0020 16 7 3.0771 -8.3585 -0.0029 17 6 2.7851 -9.4906 0.6676 18 8 1.7036 -9.6173 1.2016 19 6 2.6385 -5.9848 -0.0020 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 3.1568 -3.4354 -0.0002 24 1 -0.3307 -4.3636 0.0004 25 1 -1.1519 -6.6821 -0.0020 26 1 0.4414 -8.5564 -0.0026 27 1 3.9149 -8.2834 -0.4861 28 1 3.5142 -10.2850 0.7293 29 1 3.7007 -5.7895 0.0026 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148862470.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:23 Heat of formation + Delta-G solvation = -9.941673 kcal Electronic energy + Delta-G solvation = -13867.088574 eV Core-core repulsion = 11368.908267 eV Total energy + Delta-G solvation = -2498.180307 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.06278 -38.20118 -35.41782 -33.98650 -32.53654 -29.85211 -28.64474 -26.26149 -23.69717 -22.29447 -22.07165 -20.03136 -18.16451 -17.39114 -16.34308 -15.65111 -15.15709 -14.82029 -14.49340 -14.17707 -13.79568 -13.23035 -13.06692 -12.79152 -12.09745 -11.96111 -11.39363 -10.98447 -10.93355 -10.78070 -10.23870 -10.18192 -9.74272 -9.41891 -9.22802 -8.55627 -7.89228 -6.54842 -6.21866 -4.27398 1.76601 2.21872 2.76012 3.22955 3.25545 3.27861 3.29711 4.24594 4.44448 4.58777 4.84707 5.15130 5.41502 5.77049 5.85783 5.99044 6.10747 6.24046 6.63917 6.77820 6.94382 7.10357 7.18425 7.40909 7.42459 7.52888 7.65098 7.93716 8.11291 8.28212 8.65703 8.89202 9.38921 10.88695 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.069845 B = 0.005195 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.793804 B = 5388.184808 C = 5711.113643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.251 3.749 10 N -0.729 5.729 11 C 0.247 3.753 12 C -0.210 4.210 13 C -0.058 4.058 14 C -0.198 4.198 15 C 0.174 3.826 16 N -0.678 5.678 17 C 0.487 3.513 18 O -0.535 6.535 19 C -0.242 4.242 20 H 0.267 0.733 21 H 0.021 0.979 22 H 0.021 0.979 23 H 0.390 0.610 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.408 0.592 28 H 0.137 0.863 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 -13.782 -1.392 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.130 3.870 10 N -0.351 5.351 11 C 0.137 3.863 12 C -0.233 4.233 13 C -0.078 4.078 14 C -0.221 4.221 15 C 0.080 3.920 16 N -0.325 5.325 17 C 0.256 3.744 18 O -0.408 6.408 19 C -0.268 4.268 20 H 0.076 0.924 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.223 0.777 24 H 0.143 0.857 25 H 0.135 0.865 26 H 0.143 0.857 27 H 0.243 0.757 28 H 0.153 0.847 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.364 -13.603 -0.965 14.654 hybrid contribution 1.307 1.110 -0.227 1.730 sum 6.671 -12.492 -1.192 14.212 Atomic orbital electron populations 1.69934 1.06076 1.27484 1.49119 1.24932 0.94943 0.99442 0.94650 0.86467 0.79442 0.82257 0.78725 1.20072 1.21021 1.20067 1.21163 0.93304 0.90471 1.52966 0.92063 1.19109 0.88654 0.82556 0.96681 1.45490 1.09502 1.02366 1.77776 1.17738 0.92482 0.85293 0.90798 1.20790 0.94061 0.97264 1.11228 1.20732 0.98828 0.91836 0.96360 1.20761 0.91186 0.99608 1.10528 1.17398 0.89324 0.86125 0.99159 1.44080 1.21811 1.15055 1.51540 1.22756 0.90384 0.84100 0.77158 1.90730 1.25496 1.79787 1.44828 1.20128 0.98553 0.90466 1.17616 0.92372 0.96089 0.96119 0.77651 0.85710 0.86526 0.85677 0.75674 0.84747 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.82 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 15 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 15 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 15 9 C 0.25 6.38 4.66 -5.19 -0.02 6.36 15 10 N -0.73 -15.46 5.72 -59.83 -0.34 -15.80 15 11 C 0.25 4.82 6.65 -83.82 -0.56 4.27 15 12 C -0.21 -4.10 9.31 -39.34 -0.37 -4.46 15 13 C -0.06 -1.01 10.03 -39.64 -0.40 -1.41 15 14 C -0.20 -3.37 8.69 -39.35 -0.34 -3.71 15 15 C 0.17 2.71 6.29 -83.72 -0.53 2.18 15 16 N -0.68 -7.38 5.34 -13.76 -0.07 -7.45 15 17 C 0.49 5.17 12.49 54.05 0.67 5.85 15 18 O -0.54 -8.51 14.61 5.55 0.08 -8.43 15 19 C -0.24 -4.00 9.81 -39.20 -0.38 -4.39 15 20 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.02 0.58 7.95 -51.93 -0.41 0.16 15 22 H 0.02 0.57 7.95 -51.93 -0.41 0.16 15 23 H 0.39 7.63 8.33 -40.82 -0.34 7.29 15 24 H 0.12 2.57 6.72 -52.48 -0.35 2.22 15 25 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.13 2.12 6.22 -52.49 -0.33 1.80 15 27 H 0.41 2.88 8.93 -40.82 -0.36 2.51 15 28 H 0.14 0.67 8.06 -52.48 -0.42 0.25 15 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 15 LS Contribution 258.67 15.07 3.90 3.90 Total: -1.00 -32.09 258.67 -6.07 -38.17 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -3.01 Total: 7.25 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.34 Total: -8.59 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.32 Total: -48.07 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.09 -6.07 -38.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148862470.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.226 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds