Wall clock time and date at job start Mon Mar 30 2020 02:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48502 * 109.47028 * 240.00000 * 3 2 1 5 5 H 1.48499 * 109.46825 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46948 * 119.99907 * 3 2 1 7 7 C 1.37879 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00286 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.39674 * 119.99520 * 180.02562 * 10 9 7 12 12 C 1.38980 * 120.04108 * 359.95810 * 11 10 9 13 13 C 1.38135 * 120.06626 * 179.97438 * 12 11 10 14 14 C 1.38183 * 120.14373 * 0.04997 * 13 12 11 15 15 C 1.38909 * 120.07661 * 359.97438 * 14 13 12 16 16 N 1.39921 * 120.03107 * 180.02562 * 15 14 13 17 17 C 1.34773 * 119.99974 * 324.88167 * 16 15 14 18 18 O 1.21283 * 120.00298 * 4.61935 * 17 16 15 19 19 C 1.38758 * 119.93471 * 359.97438 * 15 14 13 20 20 H 0.96998 * 120.00125 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47167 * 60.00135 * 9 7 2 22 22 H 1.08996 * 109.47326 * 300.00124 * 9 7 2 23 23 H 0.96994 * 120.00426 * 0.02562 * 10 9 7 24 24 H 1.08007 * 119.96871 * 359.97438 * 12 11 10 25 25 H 1.08002 * 119.93060 * 180.02562 * 13 12 11 26 26 H 1.07997 * 119.95962 * 179.97438 * 14 13 12 27 27 H 0.97005 * 119.99926 * 144.88482 * 16 15 14 28 28 H 1.08005 * 119.99946 * 184.61557 * 17 16 15 29 29 H 1.07999 * 120.07311 * 179.72466 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7375 -4.9295 -0.0011 12 6 0.3713 -5.1844 -0.0007 13 6 -0.0897 -6.4866 -0.0018 14 6 0.8051 -7.5395 -0.0022 15 6 2.1719 -7.2916 -0.0020 16 7 3.0771 -8.3585 -0.0029 17 6 2.7851 -9.4906 0.6676 18 8 1.7036 -9.6173 1.2016 19 6 2.6385 -5.9848 -0.0020 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 3.1568 -3.4354 -0.0002 24 1 -0.3307 -4.3636 0.0004 25 1 -1.1519 -6.6821 -0.0020 26 1 0.4414 -8.5564 -0.0026 27 1 3.9149 -8.2834 -0.4861 28 1 3.5142 -10.2850 0.7293 29 1 3.7007 -5.7895 0.0026 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148862470.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:23 Heat of formation + Delta-G solvation = -33.316635 kcal Electronic energy + Delta-G solvation = -13868.102188 eV Core-core repulsion = 11368.908267 eV Total energy + Delta-G solvation = -2499.193921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.18941 -39.50706 -36.89326 -35.39736 -34.41094 -31.33789 -30.14660 -28.08726 -25.19122 -23.78649 -23.46355 -21.35235 -19.19101 -19.08779 -17.86424 -17.02764 -16.93242 -16.23970 -15.84312 -15.49913 -15.02768 -14.98839 -14.45247 -14.33020 -14.01293 -13.53754 -12.96112 -12.75604 -12.67440 -12.24066 -12.07878 -11.52319 -11.43584 -10.94518 -10.74003 -10.47301 -9.16246 -8.30753 -8.14828 -6.45094 0.44839 0.79880 1.40896 1.44123 1.52338 1.84252 2.30624 2.38961 2.95497 3.02841 3.06959 4.05393 4.21160 4.39654 4.48691 4.71009 4.75329 4.83281 5.10393 5.29550 5.38262 5.45344 5.53912 5.55321 5.75202 5.86995 6.14550 6.47525 6.59273 6.73804 7.15944 7.28250 7.30300 8.80938 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.069845 B = 0.005195 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.793804 B = 5388.184808 C = 5711.113643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.559 4.559 8 H 0.073 0.927 9 C 0.272 3.728 10 N -0.732 5.732 11 C 0.223 3.777 12 C -0.237 4.237 13 C -0.059 4.059 14 C -0.202 4.202 15 C 0.181 3.819 16 N -0.666 5.666 17 C 0.489 3.511 18 O -0.589 6.589 19 C -0.231 4.231 20 H 0.269 0.731 21 H -0.009 1.009 22 H -0.011 1.011 23 H 0.399 0.601 24 H 0.099 0.901 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.430 0.570 28 H 0.207 0.793 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -15.035 -1.520 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.597 4.597 8 H 0.091 0.909 9 C 0.149 3.851 10 N -0.358 5.358 11 C 0.116 3.884 12 C -0.261 4.261 13 C -0.078 4.078 14 C -0.225 4.225 15 C 0.086 3.914 16 N -0.315 5.315 17 C 0.262 3.738 18 O -0.466 6.466 19 C -0.257 4.257 20 H 0.078 0.922 21 H 0.009 0.991 22 H 0.006 0.994 23 H 0.233 0.767 24 H 0.117 0.883 25 H 0.152 0.848 26 H 0.147 0.853 27 H 0.270 0.730 28 H 0.223 0.777 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.003 -14.918 -1.113 16.965 hybrid contribution 0.502 1.290 -0.185 1.396 sum 8.504 -13.628 -1.297 16.116 Atomic orbital electron populations 1.70079 1.07917 1.28577 1.50021 1.25954 0.95816 1.03514 0.93938 0.85291 0.78056 0.77116 0.79285 1.18917 1.20764 1.19042 1.21573 0.94054 0.91217 1.52834 0.90891 1.18551 0.88734 0.84022 0.93781 1.45097 1.09038 1.02133 1.79530 1.17997 0.93045 0.85259 0.92131 1.20749 0.94172 0.97551 1.13620 1.20917 1.00136 0.91069 0.95712 1.20955 0.92076 0.99382 1.10046 1.17511 0.89759 0.87253 0.96898 1.44171 1.21811 1.13872 1.51614 1.24067 0.90441 0.84348 0.74987 1.90726 1.28260 1.80615 1.46996 1.20330 0.99441 0.89903 1.15985 0.92209 0.99086 0.99354 0.76651 0.88314 0.84834 0.85335 0.73050 0.77741 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.29 21.45 0.28 -54.64 15 2 C 0.01 0.42 5.46 84.65 0.46 0.88 15 3 Si 0.98 42.61 29.54 68.60 2.03 44.64 15 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 15 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 7 C -0.56 -30.76 9.28 25.60 0.24 -30.52 15 8 H 0.07 3.74 7.60 -2.91 -0.02 3.72 15 9 C 0.27 14.56 4.66 85.63 0.40 14.96 15 10 N -0.73 -31.84 5.72 -343.20 -1.96 -33.81 15 11 C 0.22 8.84 6.65 38.19 0.25 9.10 15 12 C -0.24 -9.72 9.31 22.42 0.21 -9.51 15 13 C -0.06 -2.08 10.03 22.23 0.22 -1.86 15 14 C -0.20 -6.65 8.69 22.42 0.19 -6.45 15 15 C 0.18 5.24 6.29 38.13 0.24 5.48 15 16 N -0.67 -11.86 5.34 -315.83 -1.69 -13.55 15 17 C 0.49 8.35 12.49 129.79 1.62 9.97 15 18 O -0.59 -17.32 14.61 -3.04 -0.04 -17.36 15 19 C -0.23 -7.25 9.81 22.52 0.22 -7.03 15 20 H 0.27 14.93 8.31 -92.71 -0.77 14.16 15 21 H -0.01 -0.50 7.95 -2.39 -0.02 -0.52 15 22 H -0.01 -0.67 7.95 -2.39 -0.02 -0.68 15 23 H 0.40 15.55 8.33 -92.71 -0.77 14.78 15 24 H 0.10 4.47 6.72 -2.91 -0.02 4.45 15 25 H 0.13 4.08 8.06 -2.91 -0.02 4.05 15 26 H 0.13 4.20 6.22 -2.91 -0.02 4.18 15 27 H 0.43 3.99 8.93 -92.70 -0.83 3.16 15 28 H 0.21 0.73 8.06 -2.91 -0.02 0.71 15 29 H 0.14 3.62 8.06 -2.91 -0.02 3.60 15 Total: -1.00 -72.39 258.67 2.26 -70.13 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.42 Total: 19.58 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 4.06 Total: -14.99 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.37 Total: -102.00 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.04 Total: -17.36 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.39 2.26 -70.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148862470.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.816 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds