Wall clock time and date at job start Mon Mar 30 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86799 * 119.99944 * 2 1 4 4 H 1.48504 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47186 * 300.00045 * 3 2 1 6 6 H 1.48501 * 109.47091 * 60.00426 * 3 2 1 7 7 C 1.40049 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99978 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99840 * 4.99476 * 9 7 2 11 11 N 1.34771 * 120.00252 * 184.99297 * 9 7 2 12 12 C 1.47049 * 120.85075 * 174.77141 * 11 9 7 13 13 C 1.53355 * 109.18043 * 115.62638 * 12 11 9 14 14 C 1.50869 * 108.93645 * 45.37430 * 13 12 11 15 15 N 1.35750 * 127.71693 * 161.87783 * 14 13 12 16 16 H 0.96999 * 125.58802 * 359.97438 * 15 14 13 17 17 C 1.36533 * 108.75611 * 179.86416 * 15 14 13 18 18 C 1.35095 * 108.28290 * 0.24848 * 17 15 14 19 19 C 1.35452 * 124.24953 * 342.23447 * 14 13 12 20 20 C 1.47431 * 120.84822 * 354.79579 * 11 9 7 21 21 H 0.97001 * 120.00200 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.51746 * 355.71499 * 12 11 9 23 23 H 1.08999 * 109.56972 * 235.57115 * 12 11 9 24 24 H 1.09000 * 109.58350 * 165.24567 * 13 12 11 25 25 H 1.09004 * 109.58007 * 285.51187 * 13 12 11 26 26 H 1.08002 * 125.85837 * 180.26812 * 17 15 14 27 27 H 1.08006 * 126.39015 * 180.02562 * 18 17 15 28 28 H 1.09007 * 109.90071 * 343.48288 * 20 11 9 29 29 H 1.09001 * 109.90420 * 104.61556 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2124 6 1 1.8820 2.3964 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0617 -2.4825 -0.0918 11 7 1.9451 -3.6455 0.1005 12 6 1.2247 -4.9221 0.2172 13 6 1.5186 -5.7813 -1.0185 14 6 2.9993 -5.7378 -1.3042 15 7 3.7232 -6.5949 -2.0685 16 1 3.3709 -7.3655 -2.5406 17 6 5.0277 -6.1919 -2.0647 18 6 5.1274 -5.0861 -1.2951 19 6 3.8438 -4.8011 -0.8101 20 6 3.4192 -3.6725 0.0974 21 1 -0.4850 0.8400 0.0004 22 1 0.1535 -4.7311 0.2817 23 1 1.5555 -5.4474 1.1132 24 1 1.2133 -6.8104 -0.8290 25 1 0.9698 -5.3893 -1.8749 26 1 5.8404 -6.6743 -2.5875 27 1 6.0283 -4.5262 -1.0915 28 1 3.8069 -2.7265 -0.2807 29 1 3.7892 -3.8491 1.1074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170182283.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:58 Heat of formation + Delta-G solvation = -12.170749 kcal Electronic energy + Delta-G solvation = -14732.050958 eV Core-core repulsion = 12233.773991 eV Total energy + Delta-G solvation = -2498.276967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.19628 -39.56238 -36.52068 -34.62641 -33.25266 -31.65890 -29.53789 -28.26768 -25.77732 -24.17048 -21.87807 -21.06231 -19.65869 -18.63242 -17.96464 -17.36600 -16.27920 -16.06798 -15.77138 -15.04871 -14.53390 -14.41190 -14.23705 -13.81292 -13.47066 -13.18948 -12.96495 -12.89760 -12.71807 -12.55036 -12.25086 -11.93000 -11.80066 -10.93063 -9.83953 -9.53462 -9.09143 -8.71755 -8.27978 -6.82274 1.38799 1.40812 1.41210 1.59296 2.09823 2.25616 2.44082 2.51594 2.85886 3.61322 3.93763 4.19931 4.25895 4.41136 4.50138 4.59906 4.74057 4.80851 4.87264 4.98595 5.09329 5.34483 5.40949 5.45897 5.78964 6.12533 6.14266 6.28425 6.43902 6.89457 6.90121 7.42885 8.47468 8.68649 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.039413 B = 0.008622 C = 0.007407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.249575 B = 3246.876868 C = 3779.546756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.542 3.458 10 O -0.632 6.632 11 N -0.646 5.646 12 C 0.122 3.878 13 C -0.052 4.052 14 C 0.003 3.997 15 N -0.542 5.542 16 H 0.427 0.573 17 C -0.006 4.006 18 C -0.211 4.211 19 C -0.204 4.204 20 C 0.195 3.805 21 H 0.274 0.726 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.107 0.893 25 H 0.055 0.945 26 H 0.205 0.795 27 H 0.147 0.853 28 H 0.078 0.922 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.917 -11.113 -3.196 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.605 4.605 8 H 0.108 0.892 9 C 0.349 3.651 10 O -0.519 6.519 11 N -0.382 5.382 12 C -0.002 4.002 13 C -0.091 4.091 14 C -0.111 4.111 15 N -0.137 5.137 16 H 0.266 0.734 17 C -0.137 4.137 18 C -0.236 4.236 19 C -0.211 4.211 20 C 0.072 3.928 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.125 0.875 25 H 0.074 0.926 26 H 0.222 0.778 27 H 0.165 0.835 28 H 0.096 0.904 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.041 -11.172 -3.316 15.383 hybrid contribution -0.217 0.465 -0.141 0.532 sum 9.824 -10.708 -3.457 14.937 Atomic orbital electron populations 1.70195 1.09526 1.28831 1.36701 1.26992 0.95519 1.04906 0.91158 0.84998 0.79467 0.75443 0.78575 1.16914 1.19410 1.19115 1.21533 0.94750 0.89891 1.54297 0.89206 1.18627 0.86547 0.84094 0.75864 1.90522 1.16420 1.87413 1.57575 1.48156 1.06298 1.05600 1.78158 1.21204 0.97362 0.84705 0.96916 1.20414 0.89193 1.01250 0.98230 1.20095 0.94294 0.95183 1.01484 1.41655 1.07762 1.24527 1.39790 0.73430 1.22394 0.86462 0.99323 1.05493 1.20809 0.96858 1.00957 1.04933 1.19927 0.95165 0.99845 1.06165 1.19858 0.79521 0.96565 0.96886 0.91607 0.91921 0.91195 0.87494 0.92606 0.77837 0.83511 0.90368 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.52 11.84 21.84 0.26 -51.26 15 2 C 0.03 1.66 5.50 85.30 0.47 2.13 15 3 Si 1.00 42.00 29.56 68.60 2.03 44.03 15 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 7 C -0.57 -33.44 8.82 24.83 0.22 -33.22 15 8 H 0.09 4.80 5.86 -2.91 -0.02 4.79 15 9 C 0.54 33.08 7.63 86.36 0.66 33.74 15 10 O -0.63 -43.72 14.48 -4.31 -0.06 -43.78 15 11 N -0.65 -31.80 2.95 -826.35 -2.44 -34.24 15 12 C 0.12 5.04 6.36 86.39 0.55 5.59 15 13 C -0.05 -1.71 6.45 30.02 0.19 -1.52 15 14 C 0.00 0.11 7.09 41.36 0.29 0.41 15 15 N -0.54 -12.63 6.06 -182.27 -1.10 -13.74 15 16 H 0.43 6.66 8.96 -92.71 -0.83 5.83 15 17 C -0.01 -0.13 11.95 83.24 0.99 0.87 15 18 C -0.21 -6.06 10.84 22.01 0.24 -5.82 15 19 C -0.20 -7.31 6.04 -19.98 -0.12 -7.43 15 20 C 0.20 8.12 6.55 85.52 0.56 8.68 15 21 H 0.27 15.46 8.29 -92.71 -0.77 14.69 15 22 H 0.06 2.90 7.03 -2.39 -0.02 2.88 15 23 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 24 H 0.11 2.61 8.14 -2.39 -0.02 2.59 15 25 H 0.06 2.03 8.14 -2.38 -0.02 2.02 15 26 H 0.20 2.60 8.06 -2.91 -0.02 2.57 15 27 H 0.15 3.67 8.06 -2.91 -0.02 3.65 15 28 H 0.08 3.43 5.73 -2.38 -0.01 3.41 15 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 Total: -1.00 -80.55 248.00 3.09 -77.46 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.35 Total: 18.11 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.06 Total: 3.43 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -3.28 Total: -99.23 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.06 Total: -43.78 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -80.55 3.09 -77.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182283.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.289 kcal (2) G-P(sol) polarization free energy of solvation -80.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds