Wall clock time and date at job start Mon Mar 30 2020 02:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00260 * 2 1 4 4 C 1.38740 * 120.05661 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94566 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05382 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94414 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47060 * 359.97438 * 7 6 5 9 9 C 1.50703 * 109.47064 * 239.99877 * 7 6 5 10 10 H 1.07996 * 119.99751 * 359.97438 * 9 7 6 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 7 6 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46999 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46942 * 119.99666 * 13 11 9 16 16 H 1.48504 * 109.46979 * 239.99580 * 13 11 9 17 17 C 1.50699 * 109.47269 * 119.99694 * 7 6 5 18 18 O 1.20757 * 120.00307 * 239.99987 * 17 7 6 19 19 C 1.38271 * 120.11334 * 0.26483 * 6 5 4 20 20 C 1.38142 * 120.05176 * 359.46417 * 19 6 5 21 21 H 1.08988 * 109.47278 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46737 * 300.00337 * 1 2 3 23 23 H 1.09002 * 109.46928 * 59.99809 * 1 2 3 24 24 H 1.08000 * 120.02685 * 359.95949 * 4 3 2 25 25 H 1.07993 * 119.97531 * 180.02562 * 5 4 3 26 26 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 27 27 H 1.08001 * 119.99811 * 60.00241 * 17 7 6 28 28 H 1.07999 * 119.97170 * 179.70234 * 19 6 5 29 29 H 1.08002 * 120.02384 * 180.27566 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0563 2.5168 -0.0011 6 6 3.3021 3.6757 -0.0005 7 6 3.9863 5.0184 -0.0005 8 1 5.0669 4.8756 -0.0005 9 6 3.5819 5.7883 1.2303 10 1 2.8975 5.3493 1.9411 11 6 4.0847 7.0534 1.4482 12 7 4.9177 7.5882 0.5823 13 14 3.5839 8.0074 2.9742 14 1 2.6444 7.1898 3.7830 15 1 4.7908 8.3190 3.7814 16 1 2.9180 9.2721 2.5710 17 6 3.5810 5.7888 -1.2307 18 8 4.4188 6.1411 -2.0258 19 6 1.9212 3.6047 0.0061 20 6 1.2917 2.3751 0.0010 21 1 -0.3633 -1.0275 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 4.0209 0.3798 -0.0003 25 1 5.1346 2.5749 -0.0019 26 1 5.2712 8.4784 0.7355 27 1 2.5412 6.0258 -1.4012 28 1 1.3344 4.5114 0.0113 29 1 0.2130 2.3203 0.0016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238345043.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:47 Heat of formation + Delta-G solvation = -75.596997 kcal Electronic energy + Delta-G solvation = -14289.475136 eV Core-core repulsion = 11756.155050 eV Total energy + Delta-G solvation = -2533.320086 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.02239 -39.71703 -38.28032 -35.31704 -32.83078 -31.86866 -29.28944 -27.66576 -25.87163 -23.77891 -22.76290 -21.30254 -18.99187 -18.68226 -17.16861 -16.85593 -16.52955 -16.51713 -15.81518 -15.41280 -15.12848 -14.52523 -14.24569 -14.20532 -13.77049 -13.50268 -13.08012 -12.83678 -12.67154 -12.37927 -11.93601 -11.79095 -11.59854 -11.29624 -10.81274 -10.18352 -9.81918 -8.87936 -8.20962 -6.39736 0.51111 0.60036 1.40781 1.44341 1.57096 1.63388 2.38954 2.48304 2.92885 3.10123 3.93666 4.00576 4.06875 4.31149 4.41416 4.48295 4.61205 4.63573 4.77286 4.83349 4.96162 5.20576 5.33760 5.42650 5.54416 5.67725 5.86907 5.99600 6.06182 6.57336 6.71551 6.99059 7.30724 8.83178 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.035079 B = 0.007777 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.001610 B = 3599.264625 C = 3999.193572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.104 3.896 4 C -0.155 4.155 5 C -0.096 4.096 6 C -0.098 4.098 7 C 0.022 3.978 8 H 0.018 0.982 9 C -0.516 4.516 10 H 0.076 0.924 11 C 0.007 3.993 12 N -0.919 5.919 13 Si 0.968 3.032 14 H -0.256 1.256 15 H -0.285 1.285 16 H -0.279 1.279 17 C 0.379 3.621 18 O -0.524 6.524 19 C -0.080 4.080 20 C -0.200 4.200 21 H 0.120 0.880 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.141 0.859 25 H 0.123 0.877 26 H 0.265 0.735 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 -11.799 0.819 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.059 3.941 4 C -0.174 4.174 5 C -0.114 4.114 6 C -0.098 4.098 7 C 0.002 3.998 8 H 0.036 0.964 9 C -0.554 4.554 10 H 0.094 0.906 11 C -0.193 4.193 12 N -0.557 5.557 13 Si 0.793 3.207 14 H -0.180 1.180 15 H -0.211 1.211 16 H -0.205 1.205 17 C 0.240 3.760 18 O -0.399 6.399 19 C -0.098 4.098 20 C -0.219 4.219 21 H 0.139 0.861 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.159 0.841 25 H 0.141 0.859 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.152 0.848 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.936 -11.661 0.360 15.324 hybrid contribution 0.097 1.072 0.724 1.298 sum -9.839 -10.588 1.085 14.495 Atomic orbital electron populations 1.23324 0.76679 1.05453 1.02176 1.86010 1.23316 1.26464 1.89058 1.19057 0.92344 0.84681 0.97977 1.20481 0.92033 0.98095 1.06773 1.20992 0.99992 0.91420 0.98968 1.19873 0.94613 0.94103 1.01229 1.18540 0.95813 0.90737 0.94666 0.96389 1.21235 1.28613 1.00123 1.05386 0.90617 1.26033 0.94473 0.98967 0.99837 1.70168 1.31551 1.16634 1.37314 0.85327 0.78160 0.78334 0.78877 1.17988 1.21077 1.20480 1.26426 0.92946 0.73668 0.82999 1.90183 1.57090 1.46068 1.46558 1.20985 0.93503 0.98041 0.97226 1.21419 1.01012 0.91345 1.08111 0.86139 0.91976 0.91850 0.84070 0.85934 0.92591 0.89721 0.84820 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 15 2 O -0.33 -8.62 10.50 -92.41 -0.97 -9.59 15 3 C 0.10 3.13 6.69 22.51 0.15 3.28 15 4 C -0.16 -4.98 9.99 22.37 0.22 -4.75 15 5 C -0.10 -3.56 9.66 22.25 0.22 -3.35 15 6 C -0.10 -4.01 4.73 -19.85 -0.09 -4.10 15 7 C 0.02 1.08 2.38 -13.03 -0.03 1.05 15 8 H 0.02 1.02 7.85 -2.39 -0.02 1.00 15 9 C -0.52 -26.72 8.22 25.60 0.21 -26.51 15 10 H 0.08 3.76 7.59 -2.91 -0.02 3.74 15 11 C 0.01 0.37 5.30 84.65 0.45 0.82 15 12 N -0.92 -53.89 12.33 21.45 0.26 -53.63 15 13 Si 0.97 41.93 29.54 68.60 2.03 43.96 15 14 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 15 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 17 C 0.38 18.96 8.84 71.24 0.63 19.59 15 18 O -0.52 -29.70 17.85 -1.44 -0.03 -29.73 15 19 C -0.08 -2.78 8.80 22.25 0.20 -2.58 15 20 C -0.20 -5.82 9.04 22.36 0.20 -5.62 15 21 H 0.12 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.06 0.91 7.66 -2.39 -0.02 0.90 15 23 H 0.06 0.91 7.66 -2.39 -0.02 0.89 15 24 H 0.14 3.87 8.06 -2.91 -0.02 3.84 15 25 H 0.12 4.47 7.94 -2.91 -0.02 4.44 15 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 27 H 0.09 3.69 8.04 -2.91 -0.02 3.67 15 28 H 0.13 4.41 8.03 -2.91 -0.02 4.39 15 29 H 0.15 3.34 6.30 -2.91 -0.02 3.33 15 Total: -1.00 -66.43 260.60 5.70 -60.73 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.14 Total: 9.02 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 3.26 Total: -20.76 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.26 Total: -53.63 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.00 Total: -39.32 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -66.43 5.70 -60.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238345043.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.865 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds