Wall clock time and date at job start Mon Mar 30 2020 02:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00147 * 2 1 4 4 C 1.50695 * 109.47195 * 180.02562 * 3 2 1 5 5 C 1.38460 * 119.92278 * 270.27308 * 4 3 2 6 6 C 1.38426 * 120.31319 * 180.23640 * 5 4 3 7 7 C 1.37908 * 120.15027 * 359.49094 * 6 5 4 8 8 C 1.39717 * 119.84638 * 0.25208 * 7 6 5 9 9 C 1.47829 * 120.15518 * 179.97438 * 8 7 6 10 10 O 1.21758 * 120.00015 * 180.02562 * 9 8 7 11 11 C 1.41807 * 119.99659 * 0.02562 * 9 8 7 12 12 H 1.08000 * 120.00239 * 353.21813 * 11 9 8 13 13 C 1.40356 * 119.99460 * 173.21547 * 11 9 8 14 14 N 1.30525 * 120.00294 * 6.10396 * 13 11 9 15 15 Si 1.86800 * 119.99751 * 186.10527 * 13 11 9 16 16 H 1.48501 * 109.47016 * 94.98673 * 15 13 11 17 17 H 1.48499 * 109.47275 * 214.98540 * 15 13 11 18 18 H 1.48497 * 109.47004 * 334.98769 * 15 13 11 19 19 C 1.37874 * 119.92205 * 90.00216 * 4 3 2 20 20 H 1.09000 * 109.46503 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46752 * 299.99753 * 1 2 3 22 22 H 1.08993 * 109.47086 * 59.99687 * 1 2 3 23 23 H 1.08997 * 109.46836 * 59.99978 * 3 2 1 24 24 H 1.09000 * 109.46888 * 300.00210 * 3 2 1 25 25 H 1.08004 * 119.84548 * 359.97438 * 5 4 3 26 26 H 1.07997 * 119.92222 * 179.77181 * 6 5 4 27 27 H 1.08005 * 120.07626 * 180.23339 * 7 6 5 28 28 H 0.97000 * 120.00397 * 180.02562 * 14 13 11 29 29 H 1.07994 * 120.07452 * 0.04231 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2011 1.1260 1.1991 6 6 5.5814 1.0216 1.2080 7 6 6.2795 0.9664 0.0199 8 6 5.5908 1.0216 -1.1945 9 6 6.3324 0.9636 -2.4720 10 8 5.7294 1.0124 -3.5287 11 6 7.7460 0.8512 -2.4667 12 1 8.2896 0.9181 -1.5359 13 6 8.4386 0.6531 -3.6713 14 7 7.7967 0.6911 -4.8072 15 14 10.2792 0.3348 -3.6489 16 1 10.5287 -1.1289 -3.6757 17 1 10.9052 0.9655 -4.8386 18 1 10.8667 0.9146 -2.4144 19 6 4.1977 1.1324 -1.1959 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6887 1.8463 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 3.6591 1.1648 2.1325 26 1 6.1124 0.9786 2.1474 27 1 7.3562 0.8812 0.0283 28 1 8.2753 0.5538 -5.6396 29 1 3.6590 1.1760 -2.1309 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247898147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:14 Heat of formation + Delta-G solvation = -68.052145 kcal Electronic energy + Delta-G solvation = -14039.762409 eV Core-core repulsion = 11506.769492 eV Total energy + Delta-G solvation = -2532.992917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.92132 -37.43090 -36.08481 -32.72020 -31.63252 -30.13057 -27.42628 -26.57363 -24.93616 -22.82830 -20.98635 -19.42458 -16.61102 -16.27130 -16.13039 -15.67327 -15.07468 -14.83300 -14.14768 -13.76200 -13.19920 -12.66383 -12.54536 -12.27180 -12.06496 -11.60283 -11.44102 -11.25956 -10.91173 -10.79673 -10.60256 -10.34061 -9.99906 -9.58698 -8.99958 -8.23831 -7.95556 -7.49276 -6.33088 -4.91935 1.80163 2.00959 3.04289 3.12292 3.15790 3.83269 3.99477 4.27689 4.70596 5.13162 5.20885 5.35509 5.42602 5.48586 5.60938 5.65289 5.68199 5.79064 6.04807 6.17296 6.28999 6.64394 6.75113 7.04496 7.14229 7.23897 7.26839 7.38789 7.68931 8.02809 8.77392 8.81841 10.29102 10.50813 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.046260 B = 0.006626 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.122987 B = 4224.989099 C = 4696.254217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.109 3.891 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.140 4.140 7 C -0.087 4.087 8 C -0.106 4.106 9 C 0.386 3.614 10 O -0.541 6.541 11 C -0.517 4.517 12 H 0.075 0.925 13 C 0.079 3.921 14 N -0.735 5.735 15 Si 0.907 3.093 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.071 4.071 20 H 0.083 0.917 21 H 0.037 0.963 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.274 0.726 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.478 0.668 9.656 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.033 3.967 4 C -0.113 4.113 5 C -0.129 4.129 6 C -0.158 4.158 7 C -0.105 4.105 8 C -0.107 4.107 9 C 0.282 3.718 10 O -0.431 6.431 11 C -0.548 4.548 12 H 0.093 0.907 13 C -0.144 4.144 14 N -0.363 5.363 15 Si 0.731 3.269 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.089 4.089 20 H 0.102 0.898 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.148 0.852 28 H 0.085 0.915 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.707 0.528 8.969 11.212 hybrid contribution 0.698 0.035 0.199 0.727 sum -6.009 0.563 9.168 10.976 Atomic orbital electron populations 1.22723 0.81671 1.02525 0.99696 1.88018 1.19032 1.27979 1.95317 1.21322 0.90554 0.84614 1.00250 1.19424 0.93239 1.04808 0.93853 1.20909 0.94344 1.01088 0.96586 1.21030 0.94011 1.02877 0.97931 1.21604 1.00486 0.96905 0.91509 1.21888 0.93802 0.96865 0.98184 1.18184 0.89086 0.79345 0.85195 1.90486 1.71243 1.49048 1.32316 1.20950 0.93516 1.46209 0.94081 0.90658 1.26020 1.00395 0.93019 0.95007 1.69961 1.37319 1.30635 0.98412 0.86343 0.82259 0.79317 0.78953 1.19410 1.20129 1.18445 1.21262 0.94271 0.96340 0.97021 0.89821 0.94402 0.94133 0.92972 0.92608 0.87061 0.86654 0.85241 0.91454 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 15 2 O -0.38 -6.19 10.69 -35.23 -0.38 -6.57 15 3 C 0.11 1.66 6.06 36.00 0.22 1.88 15 4 C -0.11 -2.11 5.50 -104.68 -0.58 -2.68 15 5 C -0.11 -1.88 9.70 -39.43 -0.38 -2.27 15 6 C -0.14 -2.44 10.03 -39.63 -0.40 -2.83 15 7 C -0.09 -1.79 9.44 -39.15 -0.37 -2.16 15 8 C -0.11 -2.58 5.88 -104.85 -0.62 -3.19 15 9 C 0.39 11.15 6.91 -34.30 -0.24 10.91 15 10 O -0.54 -17.52 14.93 5.14 0.08 -17.44 15 11 C -0.52 -14.31 8.84 -37.42 -0.33 -14.64 15 12 H 0.08 1.88 6.07 -52.49 -0.32 1.56 15 13 C 0.08 2.14 5.49 -17.31 -0.10 2.04 15 14 N -0.73 -21.28 11.76 55.57 0.65 -20.63 15 15 Si 0.91 19.29 29.57 -169.99 -5.03 14.27 15 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 18 H -0.26 -5.34 7.11 56.52 0.40 -4.93 15 19 C -0.07 -1.57 9.25 -39.15 -0.36 -1.93 15 20 H 0.08 0.82 8.14 -51.93 -0.42 0.39 15 21 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 15 22 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 15 23 H 0.05 0.66 8.09 -51.93 -0.42 0.24 15 24 H 0.06 0.81 8.08 -51.93 -0.42 0.39 15 25 H 0.11 1.55 8.06 -52.48 -0.42 1.13 15 26 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.13 2.55 6.23 -52.48 -0.33 2.22 15 28 H 0.27 7.09 8.29 -40.82 -0.34 6.75 15 29 H 0.12 2.87 7.65 -52.49 -0.40 2.47 15 LS Contribution 261.32 15.07 3.94 3.94 Total: -1.00 -33.13 261.32 -5.91 -39.04 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.13 Total: 0.81 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -2.04 Total: -13.42 kcal Atomic # 7 Polarization: -21.28 SS G_CDS: 0.65 Total: -20.63 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.30 Total: -24.01 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.13 -5.91 -39.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247898147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.015 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds