Wall clock time and date at job start Mon Mar 30 2020 02:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00147 * 2 1 4 4 C 1.50695 * 109.47195 * 180.02562 * 3 2 1 5 5 C 1.38460 * 119.92278 * 270.27308 * 4 3 2 6 6 C 1.38426 * 120.31319 * 180.23640 * 5 4 3 7 7 C 1.37908 * 120.15027 * 359.49094 * 6 5 4 8 8 C 1.39717 * 119.84638 * 0.25208 * 7 6 5 9 9 C 1.47829 * 120.15518 * 179.97438 * 8 7 6 10 10 O 1.21758 * 120.00015 * 180.02562 * 9 8 7 11 11 C 1.41807 * 119.99659 * 0.02562 * 9 8 7 12 12 H 1.08000 * 120.00239 * 353.21813 * 11 9 8 13 13 C 1.40356 * 119.99460 * 173.21547 * 11 9 8 14 14 N 1.30525 * 120.00294 * 6.10396 * 13 11 9 15 15 Si 1.86800 * 119.99751 * 186.10527 * 13 11 9 16 16 H 1.48501 * 109.47016 * 94.98673 * 15 13 11 17 17 H 1.48499 * 109.47275 * 214.98540 * 15 13 11 18 18 H 1.48497 * 109.47004 * 334.98769 * 15 13 11 19 19 C 1.37874 * 119.92205 * 90.00216 * 4 3 2 20 20 H 1.09000 * 109.46503 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46752 * 299.99753 * 1 2 3 22 22 H 1.08993 * 109.47086 * 59.99687 * 1 2 3 23 23 H 1.08997 * 109.46836 * 59.99978 * 3 2 1 24 24 H 1.09000 * 109.46888 * 300.00210 * 3 2 1 25 25 H 1.08004 * 119.84548 * 359.97438 * 5 4 3 26 26 H 1.07997 * 119.92222 * 179.77181 * 6 5 4 27 27 H 1.08005 * 120.07626 * 180.23339 * 7 6 5 28 28 H 0.97000 * 120.00397 * 180.02562 * 14 13 11 29 29 H 1.07994 * 120.07452 * 0.04231 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2011 1.1260 1.1991 6 6 5.5814 1.0216 1.2080 7 6 6.2795 0.9664 0.0199 8 6 5.5908 1.0216 -1.1945 9 6 6.3324 0.9636 -2.4720 10 8 5.7294 1.0124 -3.5287 11 6 7.7460 0.8512 -2.4667 12 1 8.2896 0.9181 -1.5359 13 6 8.4386 0.6531 -3.6713 14 7 7.7967 0.6911 -4.8072 15 14 10.2792 0.3348 -3.6489 16 1 10.5287 -1.1289 -3.6757 17 1 10.9052 0.9655 -4.8386 18 1 10.8667 0.9146 -2.4144 19 6 4.1977 1.1324 -1.1959 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6887 1.8463 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 3.6591 1.1648 2.1325 26 1 6.1124 0.9786 2.1474 27 1 7.3562 0.8812 0.0283 28 1 8.2753 0.5538 -5.6396 29 1 3.6590 1.1760 -2.1309 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247898147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:13 Heat of formation + Delta-G solvation = -90.666235 kcal Electronic energy + Delta-G solvation = -14040.743030 eV Core-core repulsion = 11506.769492 eV Total energy + Delta-G solvation = -2533.973538 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.46207 -38.84397 -37.93639 -34.83721 -33.10889 -31.77076 -29.17990 -27.93953 -26.14095 -24.62491 -22.48599 -21.27189 -18.47258 -17.97125 -17.32861 -16.84436 -16.81283 -16.22458 -15.64628 -15.37179 -14.75863 -14.52888 -14.45283 -13.64512 -13.36382 -13.22766 -13.08969 -12.72793 -12.53439 -12.33624 -12.16474 -12.04175 -11.68803 -11.02586 -10.65823 -9.75476 -9.65097 -9.61067 -8.38738 -7.11652 0.20873 0.46128 1.37025 1.37805 1.55451 2.17532 2.19845 2.73020 3.19633 3.70576 3.90904 3.95366 4.14884 4.30972 4.36795 4.41345 4.53861 4.56630 4.65902 4.77331 4.84674 5.11004 5.16897 5.18679 5.55252 5.63074 5.75695 5.93580 6.14619 6.23037 6.65939 6.75605 8.20358 8.45324 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.046260 B = 0.006626 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.122987 B = 4224.989099 C = 4696.254217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.416 6.416 3 C 0.110 3.890 4 C -0.113 4.113 5 C -0.095 4.095 6 C -0.126 4.126 7 C -0.093 4.093 8 C -0.150 4.150 9 C 0.358 3.642 10 O -0.601 6.601 11 C -0.542 4.542 12 H 0.098 0.902 13 C 0.020 3.980 14 N -0.789 5.789 15 Si 1.000 3.000 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.242 1.242 19 C -0.094 4.094 20 H 0.095 0.905 21 H 0.062 0.938 22 H 0.044 0.956 23 H 0.090 0.910 24 H 0.053 0.947 25 H 0.159 0.841 26 H 0.163 0.837 27 H 0.134 0.866 28 H 0.283 0.717 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 0.578 13.091 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.336 6.336 3 C 0.034 3.966 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.143 4.143 7 C -0.111 4.111 8 C -0.151 4.151 9 C 0.258 3.742 10 O -0.496 6.496 11 C -0.572 4.572 12 H 0.116 0.884 13 C -0.199 4.199 14 N -0.417 5.417 15 Si 0.818 3.182 16 H -0.184 1.184 17 H -0.192 1.192 18 H -0.164 1.164 19 C -0.113 4.113 20 H 0.114 0.886 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.108 0.892 24 H 0.071 0.929 25 H 0.176 0.824 26 H 0.181 0.819 27 H 0.152 0.848 28 H 0.093 0.907 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.094 0.444 12.436 13.855 hybrid contribution 0.363 0.067 -0.786 0.868 sum -5.730 0.511 11.650 12.993 Atomic orbital electron populations 1.22968 0.79215 1.03882 1.01138 1.87953 1.21751 1.28286 1.95620 1.21358 0.88375 0.84905 1.01981 1.19795 0.95345 1.03213 0.92998 1.21476 0.94468 0.97848 0.97483 1.21499 0.94416 1.00183 0.98217 1.21689 1.00861 0.97161 0.91420 1.21555 0.94676 1.01247 0.97586 1.18986 0.90414 0.78346 0.86422 1.90419 1.72406 1.51973 1.34780 1.21481 0.93714 1.46303 0.95680 0.88372 1.27381 1.06895 0.91679 0.93962 1.70114 1.40414 1.31515 0.99695 0.84973 0.73808 0.79554 0.79879 1.18414 1.19197 1.16449 1.21168 0.93841 0.98543 0.97715 0.88631 0.91896 0.93694 0.89183 0.92913 0.82372 0.81942 0.84822 0.90659 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 15 2 O -0.42 -12.68 10.69 -148.98 -1.59 -14.28 15 3 C 0.11 3.15 6.06 71.23 0.43 3.58 15 4 C -0.11 -4.08 5.50 -19.90 -0.11 -4.19 15 5 C -0.09 -2.83 9.70 22.37 0.22 -2.61 15 6 C -0.13 -3.87 10.03 22.24 0.22 -3.65 15 7 C -0.09 -3.77 9.44 22.55 0.21 -3.56 15 8 C -0.15 -7.58 5.88 -20.01 -0.12 -7.70 15 9 C 0.36 22.05 6.91 25.69 0.18 22.23 15 10 O -0.60 -42.21 14.93 -4.53 -0.07 -42.27 15 11 C -0.54 -31.06 8.84 23.67 0.21 -30.85 15 12 H 0.10 4.95 6.07 -2.91 -0.02 4.93 15 13 C 0.02 1.08 5.49 85.40 0.47 1.55 15 14 N -0.79 -47.89 11.76 21.89 0.26 -47.64 15 15 Si 1.00 39.67 29.57 68.60 2.03 41.70 15 16 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 17 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 18 H -0.24 -8.77 7.11 99.48 0.71 -8.06 15 19 C -0.09 -4.39 9.25 22.55 0.21 -4.19 15 20 H 0.10 1.67 8.14 -2.39 -0.02 1.65 15 21 H 0.06 0.95 8.14 -2.39 -0.02 0.94 15 22 H 0.04 0.85 8.14 -2.39 -0.02 0.83 15 23 H 0.09 1.90 8.09 -2.39 -0.02 1.88 15 24 H 0.05 1.51 8.08 -2.39 -0.02 1.49 15 25 H 0.16 3.32 8.06 -2.91 -0.02 3.30 15 26 H 0.16 3.53 8.06 -2.91 -0.02 3.51 15 27 H 0.13 5.14 6.23 -2.91 -0.02 5.12 15 28 H 0.28 15.26 8.29 -92.71 -0.77 14.49 15 29 H 0.09 4.78 7.65 -2.91 -0.02 4.76 15 Total: -1.00 -78.81 261.32 4.95 -73.87 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.15 Total: 16.28 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.17 Total: -27.66 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.26 Total: -47.64 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -1.66 Total: -56.55 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -78.81 4.95 -73.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247898147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.799 kcal (2) G-P(sol) polarization free energy of solvation -78.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds