Wall clock time and date at job start Mon Mar 30 2020 02:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99772 * 2 1 4 4 H 1.48503 * 109.47337 * 270.00261 * 3 2 1 5 5 H 1.48500 * 109.47258 * 29.99774 * 3 2 1 6 6 H 1.48503 * 109.47104 * 150.00120 * 3 2 1 7 7 C 1.37874 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00128 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.30333 * 300.41023 * 9 7 2 11 11 C 1.52805 * 109.14292 * 180.91765 * 9 7 2 12 12 C 1.53308 * 108.49835 * 188.79433 * 11 9 7 13 13 C 1.52836 * 108.45728 * 69.67785 * 12 11 9 14 14 C 1.50335 * 110.45953 * 309.23517 * 13 12 11 15 15 C 1.39825 * 118.70032 * 197.38041 * 14 13 12 16 16 O 1.35508 * 120.42736 * 0.37406 * 15 14 13 17 17 N 1.32662 * 119.14851 * 180.35870 * 15 14 13 18 18 C 1.31804 * 120.52924 * 359.95510 * 17 15 14 19 19 N 1.31564 * 121.73127 * 359.86879 * 18 17 15 20 20 C 1.33094 * 121.23157 * 0.11607 * 19 18 17 21 21 H 0.96991 * 119.99942 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.63169 * 308.49949 * 11 9 7 23 23 H 1.09007 * 109.63165 * 68.88967 * 11 9 7 24 24 H 1.08996 * 109.63919 * 189.36638 * 12 11 9 25 25 H 1.09001 * 109.64133 * 309.78065 * 12 11 9 26 26 H 1.09003 * 109.29990 * 69.53792 * 13 12 11 27 27 H 1.09001 * 109.30530 * 189.12530 * 13 12 11 28 28 H 0.96706 * 114.00615 * 269.98013 * 16 15 14 29 29 H 1.08002 * 119.13244 * 179.88541 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6203 -2.5511 0.8869 11 6 2.2506 -3.6548 0.0219 12 6 1.4852 -4.9643 -0.2005 13 6 0.9875 -4.9945 -1.6452 14 6 0.2631 -3.7200 -1.9782 15 6 -0.5719 -3.6955 -3.0995 16 8 -0.7278 -4.8038 -3.8634 17 7 -1.2099 -2.5733 -3.4057 18 6 -1.0607 -1.4945 -2.6634 19 7 -0.2850 -1.4875 -1.6008 20 6 0.3872 -2.5747 -1.2299 21 1 -0.4849 0.8400 -0.0004 22 1 2.9843 -3.5199 -0.7728 23 1 2.7569 -3.6824 0.9869 24 1 2.1485 -5.8109 -0.0238 25 1 0.6377 -5.0140 0.4832 26 1 1.8380 -5.1117 -2.3169 27 1 0.3075 -5.8365 -1.7746 28 1 -0.0912 -4.8750 -4.5879 29 1 -1.5894 -0.5925 -2.9345 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259484551.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:00 Heat of formation + Delta-G solvation = -0.279690 kcal Electronic energy + Delta-G solvation = -15177.636618 eV Core-core repulsion = 12679.875286 eV Total energy + Delta-G solvation = -2497.761332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.02303 -38.57086 -37.83136 -34.97163 -33.16003 -31.91070 -30.72284 -26.82130 -25.10995 -24.52681 -22.91488 -20.91061 -19.38937 -18.71445 -18.06574 -17.18656 -16.36973 -15.79452 -15.51475 -15.06970 -14.67952 -14.50666 -14.20874 -13.61701 -13.21801 -12.96907 -12.92350 -12.71521 -12.31358 -11.90025 -11.70050 -11.60738 -11.42899 -10.70951 -10.56208 -10.32792 -9.79122 -9.38630 -7.79363 -5.96406 0.22089 0.42542 1.45204 1.47305 1.54965 2.51515 2.63178 3.14158 3.39078 3.63720 3.82883 3.96060 4.09762 4.25331 4.42758 4.68290 4.84444 4.87400 4.92300 4.99181 5.23337 5.24941 5.43101 5.46612 5.64975 5.81055 6.01315 6.30687 6.42252 6.69879 6.95678 7.62147 7.70135 9.12595 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.031969 B = 0.012278 C = 0.009493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.642198 B = 2279.963904 C = 2948.719065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.566 4.566 8 H 0.051 0.949 9 C 0.081 3.919 10 H 0.015 0.985 11 C -0.101 4.101 12 C -0.115 4.115 13 C -0.054 4.054 14 C -0.222 4.222 15 C 0.328 3.672 16 O -0.476 6.476 17 N -0.574 5.574 18 C 0.258 3.742 19 N -0.436 5.436 20 C 0.194 3.806 21 H 0.250 0.750 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.418 0.582 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -8.524 -4.407 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.172 4.172 3 Si 0.768 3.232 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.604 4.604 8 H 0.069 0.931 9 C 0.063 3.937 10 H 0.033 0.967 11 C -0.139 4.139 12 C -0.152 4.152 13 C -0.092 4.092 14 C -0.228 4.228 15 C 0.139 3.861 16 O -0.286 6.286 17 N -0.300 5.300 18 C -0.030 4.030 19 N -0.149 5.149 20 C 0.051 3.949 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.279 0.721 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.103 -7.748 -4.270 8.915 hybrid contribution 0.748 0.769 -0.261 1.104 sum 1.851 -6.979 -4.531 8.524 Atomic orbital electron populations 1.70327 1.06430 1.25369 1.43547 1.25494 0.95355 1.01240 0.95113 0.85862 0.79036 0.80878 0.77458 1.21351 1.21087 1.19653 1.21052 0.92377 0.90836 1.56148 0.93056 1.17681 0.92035 0.95310 0.88720 0.96739 1.21532 0.97370 0.93590 1.01379 1.21600 1.00046 0.98013 0.95533 1.20201 0.99235 0.91995 0.97771 1.21704 1.02061 0.99525 0.99543 1.19458 0.90523 0.85614 0.90521 1.84625 1.61007 1.36084 1.46863 1.67827 1.26098 1.00857 1.35256 1.25389 0.95018 0.95033 0.87599 1.69960 1.05051 1.28758 1.11139 1.22878 0.89925 0.86332 0.95746 0.93943 0.92698 0.91566 0.88495 0.92991 0.89176 0.89327 0.72096 0.78892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.41 9.93 21.45 0.21 -46.20 15 2 C 0.04 1.92 4.91 84.65 0.42 2.33 15 3 Si 0.94 43.63 29.54 68.60 2.03 45.66 15 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 15 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 15 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 7 C -0.57 -30.72 8.49 25.60 0.22 -30.50 15 8 H 0.05 2.75 7.73 -2.91 -0.02 2.73 15 9 C 0.08 3.98 2.33 -12.43 -0.03 3.95 15 10 H 0.01 0.81 8.14 -2.38 -0.02 0.79 15 11 C -0.10 -3.79 5.18 30.63 0.16 -3.63 15 12 C -0.11 -3.42 5.98 30.64 0.18 -3.23 15 13 C -0.05 -1.60 5.36 29.68 0.16 -1.44 15 14 C -0.22 -8.77 5.75 -19.80 -0.11 -8.89 15 15 C 0.33 12.49 7.79 84.95 0.66 13.15 15 16 O -0.48 -13.91 12.77 -88.10 -1.12 -15.03 15 17 N -0.57 -24.05 10.47 -312.87 -3.28 -27.32 15 18 C 0.26 11.55 12.28 180.95 2.22 13.77 15 19 N -0.44 -22.23 5.87 -188.91 -1.11 -23.34 15 20 C 0.19 9.32 6.16 42.08 0.26 9.58 15 21 H 0.25 13.59 8.31 -92.71 -0.77 12.82 15 22 H 0.05 2.05 8.08 -2.39 -0.02 2.03 15 23 H 0.07 2.36 8.14 -2.38 -0.02 2.34 15 24 H 0.10 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.05 1.64 8.10 -2.39 -0.02 1.62 15 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 27 H 0.09 2.32 7.85 -2.39 -0.02 2.30 15 28 H 0.42 7.55 9.06 -74.05 -0.67 6.88 15 29 H 0.19 7.63 8.06 -2.91 -0.02 7.61 15 Total: -1.00 -65.46 243.88 1.36 -64.10 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.50 Total: 7.04 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 4.13 Total: -4.90 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -4.17 Total: -96.86 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.12 Total: -15.03 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -65.46 1.36 -64.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259484551.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.819 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds