Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35978 * 116.99910 * 2 1 4 4 C 1.38717 * 120.18047 * 359.97438 * 3 2 1 5 5 C 1.37902 * 120.29541 * 179.65837 * 4 3 2 6 6 C 1.39267 * 120.31807 * 0.40043 * 5 4 3 7 7 C 1.38850 * 118.96289 * 359.90498 * 6 5 4 8 8 C 1.37744 * 120.84067 * 359.74797 * 7 6 5 9 9 C 1.51655 * 107.05050 * 179.60430 * 7 6 5 10 10 C 1.54697 * 101.91593 * 344.31627 * 9 7 6 11 11 H 1.09009 * 110.74497 * 143.69427 * 10 9 7 12 12 C 1.50697 * 110.90553 * 266.96777 * 10 9 7 13 13 H 1.07996 * 119.99875 * 354.92350 * 12 10 9 14 14 C 1.37873 * 119.99896 * 174.91923 * 12 10 9 15 15 N 1.31516 * 120.00237 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99897 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47047 * 60.00435 * 16 14 12 18 18 H 1.48505 * 109.47038 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47429 * 300.00240 * 16 14 12 20 20 O 1.36245 * 129.81020 * 180.20444 * 6 5 4 21 21 H 1.08996 * 109.47227 * 59.98935 * 1 2 3 22 22 H 1.08999 * 109.46936 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46808 * 299.99630 * 1 2 3 24 24 H 1.08003 * 119.85002 * 359.87036 * 4 3 2 25 25 H 1.08004 * 119.83971 * 180.25398 * 5 4 3 26 26 H 1.08004 * 120.03033 * 180.31334 * 8 7 6 27 27 H 1.09000 * 110.93933 * 226.16031 * 9 7 6 28 28 H 1.09000 * 110.97000 * 102.48969 * 9 7 6 29 29 H 0.97001 * 119.99849 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2945 2.3773 -0.0005 5 6 1.9181 3.6073 0.0066 6 6 3.3082 3.6907 0.0059 7 6 4.0522 2.5184 0.0001 8 6 3.4320 1.2885 0.0002 9 6 5.5146 2.9198 -0.0092 10 6 5.4343 4.4100 -0.4166 11 1 6.1935 4.9940 0.1038 12 6 5.5722 4.5676 -1.9089 13 1 5.7881 3.7074 -2.5251 14 6 5.4227 5.8101 -2.4876 15 7 5.1602 6.8578 -1.7372 16 14 5.5945 6.0056 -4.3374 17 1 4.5769 5.1671 -5.0204 18 1 5.3898 7.4296 -4.7058 19 1 6.9526 5.5757 -4.7567 20 8 4.1163 4.7877 0.0158 21 1 -0.3633 0.5140 -0.8898 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.2160 2.3214 -0.0031 25 1 1.3255 4.5102 0.0102 26 1 4.0235 0.3848 0.0007 27 1 6.0721 2.3435 -0.7476 28 1 5.9556 2.8099 0.9816 29 1 5.0554 7.7319 -2.1443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259580382.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = -45.717774 kcal Electronic energy + Delta-G solvation = -14586.353009 eV Core-core repulsion = 12054.328582 eV Total energy + Delta-G solvation = -2532.024426 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.11414 -38.64622 -35.44217 -32.69516 -31.65430 -29.28220 -28.32428 -26.66675 -25.14339 -21.98747 -20.93075 -20.62046 -17.31635 -17.17073 -16.07337 -15.57499 -15.40667 -14.65380 -14.48006 -13.89724 -13.36742 -12.85151 -12.54176 -12.36751 -11.96362 -11.82558 -11.45017 -11.26401 -10.97701 -10.88127 -10.60948 -10.27940 -10.02487 -9.53349 -8.97299 -8.66166 -8.25822 -6.80083 -6.13333 -4.31476 1.89231 2.18430 3.26153 3.30766 3.33695 3.61554 4.31340 4.33024 4.72711 5.17625 5.26305 5.28680 5.36785 5.43893 5.55926 5.70565 5.82723 5.98508 6.25398 6.27019 6.51881 6.65458 6.80841 6.89014 7.11876 7.26384 7.42146 7.73448 7.83017 8.02662 8.48027 8.82319 9.42439 10.90996 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.039284 B = 0.007967 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.583761 B = 3513.498798 C = 3648.508674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.063 3.937 4 C -0.172 4.172 5 C -0.131 4.131 6 C 0.122 3.878 7 C -0.140 4.140 8 C -0.102 4.102 9 C -0.105 4.105 10 C 0.207 3.793 11 H 0.075 0.925 12 C -0.554 4.554 13 H 0.065 0.935 14 C 0.081 3.919 15 N -0.861 5.861 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.290 6.290 21 H 0.050 0.950 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 -8.884 3.187 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.019 3.981 4 C -0.191 4.191 5 C -0.150 4.150 6 C 0.074 3.926 7 C -0.141 4.141 8 C -0.121 4.121 9 C -0.142 4.142 10 C 0.154 3.846 11 H 0.093 0.907 12 C -0.591 4.591 13 H 0.083 0.917 14 C -0.126 4.126 15 N -0.497 5.497 16 Si 0.722 3.278 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.198 1.198 20 O -0.203 6.203 21 H 0.069 0.931 22 H 0.110 0.890 23 H 0.068 0.932 24 H 0.141 0.859 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.251 -8.613 3.255 11.129 hybrid contribution -0.200 0.214 -1.129 1.166 sum -6.451 -8.399 2.126 10.802 Atomic orbital electron populations 1.22903 0.79513 1.02952 1.00988 1.85991 1.20385 1.27256 1.90241 1.18512 0.91853 0.83705 1.04025 1.20703 0.99011 0.91544 1.07797 1.19952 0.91456 0.97263 1.06325 1.19732 0.91742 0.87720 0.93431 1.20737 0.96732 0.92684 1.03925 1.19333 0.90908 0.96808 1.05020 1.21975 0.91587 0.99852 1.00823 1.21054 0.80009 0.88032 0.95543 0.90700 1.21354 1.51714 0.94452 0.91587 0.91664 1.25077 0.93299 0.95709 0.98563 1.70011 1.44603 0.99456 1.35583 0.86607 0.78921 0.77248 0.84979 1.19946 1.20995 1.19836 1.87149 1.23378 1.30048 1.79751 0.93124 0.89013 0.93180 0.85939 0.86081 0.86107 0.90010 0.91401 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.82 101.05 0.99 1.35 15 2 O -0.32 -5.17 10.50 -19.67 -0.21 -5.37 15 3 C 0.06 1.14 6.69 -39.21 -0.26 0.88 15 4 C -0.17 -3.03 9.02 -39.53 -0.36 -3.38 15 5 C -0.13 -2.67 10.06 -39.32 -0.40 -3.06 15 6 C 0.12 2.87 6.96 -38.97 -0.27 2.60 15 7 C -0.14 -3.02 6.26 -104.11 -0.65 -3.67 15 8 C -0.10 -1.96 9.98 -39.56 -0.39 -2.36 15 9 C -0.11 -2.23 6.64 -26.52 -0.18 -2.41 15 10 C 0.21 5.29 3.50 -26.99 -0.09 5.20 15 11 H 0.08 1.95 8.14 -51.92 -0.42 1.52 15 12 C -0.55 -15.29 8.74 -34.44 -0.30 -15.59 15 13 H 0.07 1.76 7.60 -52.49 -0.40 1.36 15 14 C 0.08 2.24 5.42 -17.82 -0.10 2.15 15 15 N -0.86 -25.04 12.95 55.43 0.72 -24.33 15 16 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 15 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 20 O -0.29 -7.75 10.37 -20.52 -0.21 -7.97 15 21 H 0.05 0.53 7.66 -51.93 -0.40 0.14 15 22 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.05 0.51 7.67 -51.93 -0.40 0.11 15 24 H 0.12 1.74 6.30 -52.48 -0.33 1.41 15 25 H 0.12 2.29 8.06 -52.48 -0.42 1.87 15 26 H 0.12 2.06 8.06 -52.48 -0.42 1.64 15 27 H 0.08 1.65 7.77 -51.93 -0.40 1.25 15 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 LS Contribution 253.62 15.07 3.82 3.82 Total: -1.00 -30.66 253.62 -6.09 -36.74 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.18 Total: -0.75 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.01 Total: -18.30 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.72 Total: -24.33 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.42 Total: -13.34 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.66 -6.09 -36.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580382.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.975 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds