Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35978 * 116.99910 * 2 1 4 4 C 1.38717 * 120.18047 * 359.97438 * 3 2 1 5 5 C 1.37902 * 120.29541 * 179.65837 * 4 3 2 6 6 C 1.39267 * 120.31807 * 0.40043 * 5 4 3 7 7 C 1.38850 * 118.96289 * 359.90498 * 6 5 4 8 8 C 1.37744 * 120.84067 * 359.74797 * 7 6 5 9 9 C 1.51655 * 107.05050 * 179.60430 * 7 6 5 10 10 C 1.54697 * 101.91593 * 344.31627 * 9 7 6 11 11 H 1.09009 * 110.74497 * 143.69427 * 10 9 7 12 12 C 1.50697 * 110.90553 * 266.96777 * 10 9 7 13 13 H 1.07996 * 119.99875 * 354.92350 * 12 10 9 14 14 C 1.37873 * 119.99896 * 174.91923 * 12 10 9 15 15 N 1.31516 * 120.00237 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99897 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47047 * 60.00435 * 16 14 12 18 18 H 1.48505 * 109.47038 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47429 * 300.00240 * 16 14 12 20 20 O 1.36245 * 129.81020 * 180.20444 * 6 5 4 21 21 H 1.08996 * 109.47227 * 59.98935 * 1 2 3 22 22 H 1.08999 * 109.46936 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46808 * 299.99630 * 1 2 3 24 24 H 1.08003 * 119.85002 * 359.87036 * 4 3 2 25 25 H 1.08004 * 119.83971 * 180.25398 * 5 4 3 26 26 H 1.08004 * 120.03033 * 180.31334 * 8 7 6 27 27 H 1.09000 * 110.93933 * 226.16031 * 9 7 6 28 28 H 1.09000 * 110.97000 * 102.48969 * 9 7 6 29 29 H 0.97001 * 119.99849 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2945 2.3773 -0.0005 5 6 1.9181 3.6073 0.0066 6 6 3.3082 3.6907 0.0059 7 6 4.0522 2.5184 0.0001 8 6 3.4320 1.2885 0.0002 9 6 5.5146 2.9198 -0.0092 10 6 5.4343 4.4100 -0.4166 11 1 6.1935 4.9940 0.1038 12 6 5.5722 4.5676 -1.9089 13 1 5.7881 3.7074 -2.5251 14 6 5.4227 5.8101 -2.4876 15 7 5.1602 6.8578 -1.7372 16 14 5.5945 6.0056 -4.3374 17 1 4.5769 5.1671 -5.0204 18 1 5.3898 7.4296 -4.7058 19 1 6.9526 5.5757 -4.7567 20 8 4.1163 4.7877 0.0158 21 1 -0.3633 0.5140 -0.8898 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.2160 2.3214 -0.0031 25 1 1.3255 4.5102 0.0102 26 1 4.0235 0.3848 0.0007 27 1 6.0721 2.3435 -0.7476 28 1 5.9556 2.8099 0.9816 29 1 5.0554 7.7319 -2.1443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259580382.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = -65.190967 kcal Electronic energy + Delta-G solvation = -14587.197430 eV Core-core repulsion = 12054.328582 eV Total energy + Delta-G solvation = -2532.868847 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72678 -40.06897 -36.98096 -34.74040 -33.33677 -30.79581 -30.00926 -27.77936 -27.04646 -23.64753 -22.66549 -22.15401 -19.17892 -18.60745 -17.65049 -17.21294 -16.65755 -16.52802 -16.11950 -15.52424 -14.95937 -14.24508 -14.14522 -14.03345 -13.56536 -13.32772 -12.99447 -12.80576 -12.70080 -12.61691 -12.36469 -11.80458 -11.68454 -11.32297 -10.78208 -10.71616 -9.78086 -8.46908 -8.17364 -6.47394 0.37099 0.62031 1.38093 1.40529 1.48561 2.34883 2.40883 2.73413 2.97268 3.29490 3.80818 3.93872 4.15792 4.23308 4.36803 4.48247 4.50317 4.61053 4.71430 4.80820 4.95216 5.04703 5.22557 5.37703 5.40560 5.58345 5.64986 5.76217 5.99648 6.46568 6.59674 6.86763 7.30846 8.82975 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.039284 B = 0.007967 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.583761 B = 3513.498798 C = 3648.508674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.077 3.923 4 C -0.164 4.164 5 C -0.136 4.136 6 C 0.070 3.930 7 C -0.148 4.148 8 C -0.110 4.110 9 C -0.094 4.094 10 C 0.196 3.804 11 H 0.054 0.946 12 C -0.570 4.570 13 H 0.065 0.935 14 C 0.028 3.972 15 N -0.899 5.899 16 Si 0.962 3.038 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.260 1.260 20 O -0.325 6.325 21 H 0.059 0.941 22 H 0.122 0.878 23 H 0.064 0.936 24 H 0.162 0.838 25 H 0.127 0.873 26 H 0.142 0.858 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 -10.965 2.564 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.032 3.968 4 C -0.182 4.182 5 C -0.155 4.155 6 C 0.023 3.977 7 C -0.149 4.149 8 C -0.129 4.129 9 C -0.131 4.131 10 C 0.142 3.858 11 H 0.071 0.929 12 C -0.607 4.607 13 H 0.083 0.917 14 C -0.175 4.175 15 N -0.536 5.536 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.185 1.185 20 O -0.240 6.240 21 H 0.078 0.922 22 H 0.140 0.860 23 H 0.082 0.918 24 H 0.180 0.820 25 H 0.145 0.855 26 H 0.160 0.840 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.738 -10.724 2.638 13.484 hybrid contribution 0.097 0.707 -0.862 1.119 sum -7.641 -10.017 1.777 12.723 Atomic orbital electron populations 1.23327 0.76696 1.05507 1.02085 1.86007 1.23209 1.25782 1.89617 1.18636 0.91729 0.84798 1.01597 1.21050 1.00939 0.90133 1.06079 1.20244 0.90468 0.98905 1.05878 1.20160 0.93011 0.87536 0.97011 1.20804 0.96418 0.93093 1.04547 1.19574 0.92007 0.96571 1.04730 1.21837 0.92258 0.96909 1.02126 1.20978 0.79706 0.90530 0.94545 0.92856 1.21698 1.51506 0.94607 0.92890 0.91710 1.25940 0.92945 0.95383 1.03267 1.70144 1.46045 0.99880 1.37520 0.85563 0.79321 0.77283 0.79210 1.19869 1.20464 1.18451 1.87031 1.23964 1.32011 1.80988 0.92201 0.85983 0.91771 0.82029 0.85494 0.84001 0.89215 0.89221 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.82 113.37 1.11 1.43 15 2 O -0.33 -9.26 10.50 -93.30 -0.98 -10.24 15 3 C 0.08 2.56 6.69 22.51 0.15 2.72 15 4 C -0.16 -5.30 9.02 22.30 0.20 -5.10 15 5 C -0.14 -5.45 10.06 22.44 0.23 -5.23 15 6 C 0.07 3.31 6.96 22.66 0.16 3.47 15 7 C -0.15 -6.32 6.26 -19.53 -0.12 -6.45 15 8 C -0.11 -4.03 9.98 22.28 0.22 -3.80 15 9 C -0.09 -4.03 6.64 30.73 0.20 -3.83 15 10 C 0.20 10.42 3.50 30.43 0.11 10.52 15 11 H 0.05 2.95 8.14 -2.38 -0.02 2.93 15 12 C -0.57 -32.20 8.74 25.60 0.22 -31.98 15 13 H 0.06 3.55 7.60 -2.91 -0.02 3.52 15 14 C 0.03 1.57 5.42 84.65 0.46 2.03 15 15 N -0.90 -53.97 12.95 21.45 0.28 -53.69 15 16 Si 0.96 43.90 29.54 68.60 2.03 45.93 15 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 20 O -0.33 -18.13 10.37 -96.35 -1.00 -19.12 15 21 H 0.06 0.98 7.66 -2.39 -0.02 0.96 15 22 H 0.12 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.06 0.99 7.67 -2.38 -0.02 0.97 15 24 H 0.16 3.87 6.30 -2.91 -0.02 3.85 15 25 H 0.13 4.78 8.06 -2.91 -0.02 4.76 15 26 H 0.14 4.48 8.06 -2.91 -0.02 4.45 15 27 H 0.09 3.61 7.77 -2.39 -0.02 3.59 15 28 H 0.09 3.35 8.14 -2.39 -0.02 3.33 15 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -67.51 253.62 4.42 -63.09 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.15 Total: 10.25 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 2.94 Total: -36.21 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.28 Total: -53.69 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.98 Total: -29.37 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.51 4.42 -63.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580382.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.098 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds