Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48504 * 109.47103 * 270.00035 * 3 2 1 5 5 H 1.48496 * 109.47507 * 29.99883 * 3 2 1 6 6 H 1.48504 * 109.47116 * 150.00273 * 3 2 1 7 7 C 1.37880 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00268 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46770 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.23443 * 55.57558 * 10 9 7 12 12 C 1.53177 * 109.23615 * 174.99817 * 10 9 7 13 13 C 1.50578 * 109.24060 * 172.80128 * 12 10 9 14 14 N 1.33159 * 129.79847 * 159.53733 * 13 12 10 15 15 H 0.97001 * 125.73071 * 0.30668 * 14 13 12 16 16 N 1.40300 * 108.53154 * 180.31146 * 14 13 12 17 17 C 1.30906 * 109.10131 * 359.91886 * 16 14 13 18 18 C 1.39269 * 123.10670 * 339.71658 * 13 12 10 19 19 C 1.47166 * 121.49616 * 359.65565 * 18 13 12 20 20 O 1.21313 * 122.44028 * 168.50797 * 19 18 13 21 21 C 1.52144 * 115.11221 * 348.78102 * 19 18 13 22 22 H 0.97006 * 120.00164 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46902 * 60.00290 * 9 7 2 24 24 H 1.08999 * 109.46753 * 299.99777 * 9 7 2 25 25 H 1.09002 * 109.50690 * 52.87214 * 12 10 9 26 26 H 1.09001 * 109.50760 * 292.73606 * 12 10 9 27 27 H 1.07994 * 126.20010 * 179.97438 * 17 16 14 28 28 H 1.08997 * 109.63660 * 162.22310 * 21 19 18 29 29 H 1.09000 * 109.63708 * 282.83560 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9207 -3.5569 0.8495 12 6 1.4781 -4.9819 0.1266 13 6 2.4350 -6.1309 -0.0505 14 7 2.3179 -7.4033 0.3244 15 1 1.5572 -7.7902 0.7854 16 7 3.4796 -8.0900 -0.0594 17 6 4.2917 -7.2564 -0.6589 18 6 3.6713 -6.0013 -0.6786 19 6 4.1249 -4.7122 -1.2247 20 8 5.2667 -4.5256 -1.5896 21 6 3.0590 -3.6287 -1.2923 22 1 -0.4851 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8903 25 1 0.7063 -5.0292 -0.6417 26 1 1.0159 -5.0416 1.1120 27 1 5.2639 -7.4937 -1.0647 28 1 3.5341 -2.6537 -1.4005 29 1 2.4007 -3.8149 -2.1409 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259602053.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = -6.963474 kcal Electronic energy + Delta-G solvation = -14435.320208 eV Core-core repulsion = 11937.269045 eV Total energy + Delta-G solvation = -2498.051162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.61212 -39.78784 -37.62579 -34.71298 -33.08887 -31.62593 -29.49596 -28.55400 -25.19884 -23.33060 -22.78837 -21.65233 -19.46504 -18.64074 -18.21486 -16.78195 -16.40443 -16.12328 -15.66911 -15.43160 -15.22845 -15.13285 -14.28509 -13.82933 -13.58561 -13.30814 -12.86529 -12.67137 -12.46841 -12.24787 -12.04661 -11.61837 -11.33456 -11.03886 -10.74568 -10.52006 -10.42007 -9.68424 -8.14729 -6.21164 0.29984 0.96300 1.42907 1.45074 1.54132 1.69289 2.13573 2.45547 3.19897 3.32140 3.55764 3.68578 3.81609 4.07447 4.35749 4.46747 4.51720 4.69284 4.75341 4.97135 5.18540 5.20521 5.29224 5.42920 5.57947 5.78332 5.91193 6.18467 6.32754 6.45301 6.71712 6.94055 7.46996 8.96296 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.046692 B = 0.007199 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.535776 B = 3888.511985 C = 4374.627918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.034 3.966 10 C -0.058 4.058 11 H 0.057 0.943 12 C -0.055 4.055 13 C 0.175 3.825 14 N -0.436 5.436 15 H 0.458 0.542 16 N -0.322 5.322 17 C 0.108 3.892 18 C -0.360 4.360 19 C 0.436 3.564 20 O -0.511 6.511 21 C -0.146 4.146 22 H 0.262 0.738 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.207 0.793 28 H 0.079 0.921 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.325 -12.673 0.402 12.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.073 0.927 9 C -0.003 4.003 10 C -0.077 4.077 11 H 0.076 0.924 12 C -0.094 4.094 13 C 0.037 3.963 14 N -0.140 5.140 15 H 0.306 0.694 16 N -0.144 5.144 17 C -0.078 4.078 18 C -0.373 4.373 19 C 0.318 3.682 20 O -0.390 6.390 21 C -0.184 4.184 22 H 0.071 0.929 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.224 0.776 28 H 0.098 0.902 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.619 -13.719 0.611 13.828 hybrid contribution 0.068 1.767 -0.054 1.769 sum 1.687 -11.952 0.556 12.083 Atomic orbital electron populations 1.70035 1.07247 1.27450 1.52075 1.25708 0.95557 1.02409 0.95252 0.85727 0.78828 0.79946 0.78260 1.20225 1.20990 1.19414 1.21642 0.93322 0.92381 1.49677 0.92672 1.19018 0.93655 0.91212 0.96415 1.20892 0.96845 0.94037 0.95964 0.92423 1.20614 0.95566 0.87393 1.05800 1.22205 0.95239 0.87344 0.91535 1.45916 1.17283 1.05854 1.44985 0.69425 1.77435 0.94776 1.20144 1.22026 1.24004 0.99526 0.89670 0.94555 1.20996 0.99237 0.97363 1.19693 1.22329 0.87485 0.87502 0.70922 1.90459 1.22415 1.83905 1.42247 1.22244 0.97490 0.98149 1.00499 0.92938 0.97174 0.97267 0.86656 0.87028 0.77646 0.90248 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.78 13.29 21.45 0.28 -52.50 15 2 C 0.01 0.48 5.46 84.66 0.46 0.94 15 3 Si 0.95 43.01 29.54 68.60 2.03 45.03 15 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 15 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 7 C -0.53 -27.78 8.32 25.60 0.21 -27.56 15 8 H 0.06 2.86 6.98 -2.91 -0.02 2.84 15 9 C 0.03 1.53 4.44 29.85 0.13 1.66 15 10 C -0.06 -2.00 2.06 -10.80 -0.02 -2.02 15 11 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 12 C -0.06 -1.34 5.52 29.87 0.16 -1.18 15 13 C 0.18 4.30 7.27 42.57 0.31 4.61 15 14 N -0.44 -9.01 7.25 -46.72 -0.34 -9.35 15 15 H 0.46 5.86 8.96 -213.19 -1.91 3.94 15 16 N -0.32 -8.15 12.65 -56.89 -0.72 -8.87 15 17 C 0.11 2.87 12.08 85.26 1.03 3.90 15 18 C -0.36 -10.70 6.10 -20.25 -0.12 -10.82 15 19 C 0.44 15.28 7.10 28.50 0.20 15.48 15 20 O -0.51 -20.82 17.99 -3.13 -0.06 -20.88 15 21 C -0.15 -5.14 5.26 30.25 0.16 -4.98 15 22 H 0.26 14.19 8.31 -92.70 -0.77 13.42 15 23 H 0.01 0.47 8.14 -2.39 -0.02 0.45 15 24 H 0.01 0.43 8.14 -2.39 -0.02 0.41 15 25 H 0.12 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.11 2.26 8.14 -2.39 -0.02 2.24 15 27 H 0.21 4.54 8.06 -2.91 -0.02 4.52 15 28 H 0.08 3.21 6.71 -2.39 -0.02 3.19 15 29 H 0.11 3.40 8.14 -2.39 -0.02 3.38 15 Total: -1.00 -65.48 253.48 2.99 -62.49 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -0.74 Total: 4.04 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 2.53 Total: -19.97 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -0.77 Total: -70.72 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.48 2.99 -62.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602053.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.531 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds