Wall clock time and date at job start Mon Mar 30 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34246 * 125.30215 * 2 1 4 4 C 1.41633 * 107.11243 * 180.02562 * 3 2 1 5 5 C 1.38861 * 106.40765 * 359.97438 * 4 3 2 6 6 O 1.34500 * 125.29748 * 180.02562 * 2 1 3 7 7 C 1.40223 * 107.23313 * 180.02562 * 5 4 3 8 8 C 1.50703 * 125.59337 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46970 * 89.99983 * 8 7 5 10 10 H 1.07999 * 120.00118 * 0.02562 * 9 8 7 11 11 C 1.37869 * 119.99740 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00295 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99888 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47187 * 60.00318 * 13 11 9 15 15 H 1.48502 * 109.47123 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46976 * 300.00305 * 13 11 9 17 17 N 1.30653 * 108.81852 * 0.03062 * 7 5 4 18 18 N 1.36725 * 146.50700 * 180.02562 * 4 3 2 19 19 C 1.46501 * 126.10230 * 359.71360 * 18 4 3 20 20 H 1.09006 * 109.46712 * 89.99818 * 1 2 3 21 21 H 1.08991 * 109.47464 * 210.00340 * 1 2 3 22 22 H 1.09006 * 109.47120 * 330.00712 * 1 2 3 23 23 H 1.08004 * 126.43965 * 0.02562 * 3 2 1 24 24 H 1.08997 * 109.47304 * 209.99875 * 8 7 5 25 25 H 1.08998 * 109.46653 * 330.00126 * 8 7 5 26 26 H 0.97005 * 120.00062 * 179.97438 * 12 11 9 27 27 H 1.08995 * 109.47348 * 89.99943 * 19 18 4 28 28 H 1.09000 * 109.46872 * 209.99678 * 19 18 4 29 29 H 1.08996 * 109.46773 * 329.99536 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2828 1.0956 0.0000 4 6 3.6283 0.6535 -0.0006 5 6 3.5851 -0.7345 -0.0004 6 8 2.2841 -1.0977 -0.0005 7 6 4.9108 -1.1913 -0.0003 8 6 5.3408 -2.6357 0.0004 9 6 5.4839 -3.1180 -1.4202 10 1 5.2838 -2.4458 -2.2414 11 6 5.8711 -4.4172 -1.6714 12 7 6.1151 -5.2357 -0.6714 13 14 6.0491 -5.0148 -3.4322 14 1 7.0697 -4.1945 -4.1326 15 1 6.4727 -6.4381 -3.4315 16 1 4.7458 -4.8871 -4.1324 17 7 5.7122 -0.1595 0.0001 18 7 4.9471 1.0143 -0.0007 19 6 5.4673 2.3839 -0.0058 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8901 0.5138 23 1 1.9444 2.1213 0.0004 24 1 6.2976 -2.7297 0.5141 25 1 4.5916 -3.2375 0.5148 26 1 6.3872 -6.1498 -0.8481 27 1 5.5952 2.7278 1.0206 28 1 6.4289 2.4053 -0.5186 29 1 4.7649 3.0373 -0.5231 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259722939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:23 Heat of formation + Delta-G solvation = 61.119086 kcal Electronic energy + Delta-G solvation = -14389.576780 eV Core-core repulsion = 11894.477899 eV Total energy + Delta-G solvation = -2495.098881 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.86288 -40.56486 -35.86946 -34.37381 -33.49561 -31.82391 -30.74529 -27.45085 -27.12671 -25.00289 -22.56890 -21.57770 -20.70341 -18.64441 -17.97705 -17.48552 -17.36430 -16.51582 -15.74731 -14.91078 -14.62280 -14.47194 -14.18991 -13.98380 -13.74829 -13.39098 -13.30084 -13.14377 -12.81692 -12.64729 -12.45833 -12.04140 -11.76689 -11.70158 -11.03313 -10.63968 -9.22767 -9.20509 -8.24427 -6.38301 0.26533 1.21448 1.37050 1.42377 1.49510 1.56775 1.66728 2.01345 2.40424 3.06481 3.41787 3.55310 3.92967 4.26788 4.42074 4.44288 4.46610 4.60996 4.62589 4.77313 4.79279 5.04251 5.10521 5.25833 5.37105 5.53087 5.65047 6.00500 6.10875 6.26055 6.67348 6.68049 7.29079 8.86157 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.008486 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.743832 B = 3298.720465 C = 3869.381316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.046 3.954 3 C -0.211 4.211 4 C 0.036 3.964 5 C -0.143 4.143 6 O -0.189 6.189 7 C 0.134 3.866 8 C 0.098 3.902 9 C -0.533 4.533 10 H 0.046 0.954 11 C 0.011 3.989 12 N -0.925 5.925 13 Si 0.972 3.028 14 H -0.269 1.269 15 H -0.272 1.272 16 H -0.268 1.268 17 N -0.293 5.293 18 N -0.380 5.380 19 C 0.105 3.895 20 H 0.103 0.897 21 H 0.083 0.917 22 H 0.127 0.873 23 H 0.198 0.802 24 H 0.017 0.983 25 H 0.018 0.982 26 H 0.270 0.730 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 15.500 0.639 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.006 4.006 3 C -0.233 4.233 4 C -0.086 4.086 5 C -0.198 4.198 6 O -0.087 6.087 7 C -0.034 4.034 8 C 0.059 3.941 9 C -0.572 4.572 10 H 0.065 0.935 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.795 3.205 14 H -0.194 1.194 15 H -0.196 1.196 16 H -0.193 1.193 17 N -0.113 5.113 18 N -0.170 5.170 19 C -0.034 4.034 20 H 0.121 0.879 21 H 0.102 0.898 22 H 0.145 0.855 23 H 0.215 0.785 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.364 15.589 0.703 18.199 hybrid contribution -0.128 -0.841 -0.580 1.030 sum -9.492 14.748 0.123 17.539 Atomic orbital electron populations 1.20701 0.80506 1.06182 1.05523 1.23713 0.96295 0.82210 0.98417 1.20645 0.85340 1.01601 1.15689 1.20152 0.89226 0.93691 1.05504 1.20342 0.85120 0.93247 1.21123 1.83948 1.13862 1.35149 1.75710 1.22021 0.86207 0.97153 0.98061 1.17562 0.95853 0.83067 0.97619 1.21103 1.47517 0.97110 0.91471 0.93543 1.25903 0.94192 0.96305 1.02438 1.70058 1.46509 1.06665 1.33216 0.85403 0.78968 0.77531 0.78550 1.19356 1.19648 1.19280 1.77163 1.18278 0.89724 1.26153 1.47907 1.00533 1.06323 1.62284 1.22144 1.01951 0.74765 1.04505 0.87865 0.89800 0.85457 0.78477 0.96458 0.96375 0.92129 0.89485 0.89065 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.40 71.23 0.74 -0.42 15 2 C 0.05 1.37 7.27 24.77 0.18 1.55 15 3 C -0.21 -5.93 10.77 22.20 0.24 -5.69 15 4 C 0.04 1.42 7.74 39.37 0.30 1.72 15 5 C -0.14 -6.87 8.14 22.90 0.19 -6.68 15 6 O -0.19 -8.15 10.68 -12.18 -0.13 -8.28 15 7 C 0.13 7.20 6.38 43.22 0.28 7.47 15 8 C 0.10 5.89 5.53 29.10 0.16 6.05 15 9 C -0.53 -33.22 9.09 25.60 0.23 -32.99 15 10 H 0.05 2.90 7.74 -2.91 -0.02 2.88 15 11 C 0.01 0.64 5.46 84.65 0.46 1.10 15 12 N -0.93 -57.63 13.29 21.44 0.28 -57.34 15 13 Si 0.97 46.22 29.54 68.60 2.03 48.25 15 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 17 N -0.29 -14.41 12.52 -47.25 -0.59 -15.00 15 18 N -0.38 -14.71 4.07 -360.93 -1.47 -16.18 15 19 C 0.11 2.50 11.49 127.77 1.47 3.97 15 20 H 0.10 1.32 8.14 -2.38 -0.02 1.30 15 21 H 0.08 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.13 1.08 8.14 -2.38 -0.02 1.06 15 23 H 0.20 3.43 8.06 -2.91 -0.02 3.41 15 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 25 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 26 H 0.27 15.57 8.31 -92.70 -0.77 14.80 15 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 Total: -1.00 -80.28 262.92 5.52 -74.75 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: 1.15 Total: -2.29 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.25 Total: -23.92 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -1.77 Total: -88.52 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.13 Total: -8.28 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -80.28 5.52 -74.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259722939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.873 kcal (2) G-P(sol) polarization free energy of solvation -80.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds