Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31757 * 119.05976 * 2 1 4 4 C 1.32628 * 120.96424 * 179.97438 * 3 2 1 5 5 C 1.38060 * 119.02937 * 0.02562 * 4 3 2 6 6 C 1.39325 * 118.56180 * 359.97438 * 5 4 3 7 7 O 1.35510 * 120.54615 * 179.97438 * 6 5 4 8 8 N 1.31766 * 119.05737 * 180.02562 * 2 1 3 9 9 C 1.51056 * 109.94113 * 179.97438 * 5 4 3 10 10 C 1.54425 * 105.13391 * 17.02453 * 9 5 4 11 11 H 1.08997 * 110.99204 * 215.62720 * 10 9 5 12 12 C 1.50698 * 110.82344 * 92.14918 * 10 9 5 13 13 H 1.08005 * 119.99819 * 5.57963 * 12 10 9 14 14 C 1.37875 * 120.00046 * 185.57304 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.51187 * 131.21941 * 180.02562 * 4 3 2 21 21 H 1.08996 * 109.47499 * 269.98929 * 1 2 3 22 22 H 1.09007 * 109.46539 * 29.98869 * 1 2 3 23 23 H 1.08995 * 109.46877 * 149.98331 * 1 2 3 24 24 H 0.96709 * 113.99948 * 90.00590 * 7 6 5 25 25 H 1.08998 * 110.31293 * 258.10624 * 9 5 4 26 26 H 1.09008 * 110.30481 * 135.93789 * 9 5 4 27 27 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 28 28 H 1.09003 * 110.30078 * 44.05198 * 20 4 3 29 29 H 1.09002 * 110.30224 * 281.90529 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1517 0.0000 4 6 3.4725 1.1958 0.0005 5 6 4.1822 0.0116 0.0005 6 6 3.4750 -1.1889 0.0005 7 8 4.1309 -2.3746 0.0000 8 7 2.1470 -1.1518 -0.0005 9 6 5.6651 0.2996 0.0005 10 6 5.7890 1.7757 0.4369 11 1 6.6105 2.2689 -0.0827 12 6 5.9632 1.8800 1.9302 13 1 6.0768 0.9853 2.5244 14 6 5.9776 3.1176 2.5378 15 7 5.8389 4.2070 1.8143 16 14 6.1943 3.2469 4.3886 17 1 6.1742 4.6763 4.7908 18 1 7.4926 2.6406 4.7787 19 1 5.0877 2.5265 5.0681 20 6 4.4304 2.3655 0.0011 21 1 -0.3634 -0.0002 1.0276 22 1 -0.3633 0.8902 -0.5137 23 1 -0.3633 -0.8898 -0.5141 24 1 4.3216 -2.7191 0.8833 25 1 6.0767 0.1649 -0.9998 26 1 6.1765 -0.3494 0.7115 27 1 5.7268 4.1399 0.8531 28 1 4.1013 3.1234 0.7120 29 1 4.5073 2.7919 -0.9990 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773467.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = -27.709856 kcal Electronic energy + Delta-G solvation = -14747.287251 eV Core-core repulsion = 12248.336458 eV Total energy + Delta-G solvation = -2498.950793 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.52913 -38.82871 -38.45314 -34.81485 -33.78054 -32.01995 -29.62099 -28.40282 -26.28768 -24.45674 -22.74955 -21.75102 -19.74738 -19.19949 -18.67948 -17.25124 -15.91590 -15.73933 -15.67769 -15.45956 -14.92020 -14.56073 -14.04695 -13.61677 -13.52024 -13.18027 -12.98849 -12.94267 -12.62984 -12.42501 -11.96818 -11.77630 -11.58372 -11.39219 -10.70390 -10.52791 -10.32271 -9.88909 -8.57697 -6.34051 -0.19334 -0.10706 1.53756 1.59636 1.78808 2.26043 2.56408 2.58725 2.74906 3.17828 3.36246 3.52974 3.80623 4.13213 4.36904 4.41013 4.56129 4.67585 4.72699 4.82690 4.88854 4.93565 5.01273 5.24138 5.33848 5.47230 5.87946 6.04141 6.18835 6.44900 6.62974 7.01505 7.44216 8.79986 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.031530 B = 0.009294 C = 0.008620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.833495 B = 3012.001436 C = 3247.398687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.318 3.682 3 N -0.545 5.545 4 C 0.185 3.815 5 C -0.219 4.219 6 C 0.363 3.637 7 O -0.475 6.475 8 N -0.552 5.552 9 C -0.045 4.045 10 C 0.028 3.972 11 H 0.031 0.969 12 C -0.602 4.602 13 H 0.047 0.953 14 C -0.025 4.025 15 N -0.933 5.933 16 Si 1.107 2.893 17 H -0.285 1.285 18 H -0.267 1.267 19 H -0.281 1.281 20 C -0.073 4.073 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.424 0.576 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.266 0.734 28 H 0.068 0.932 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -9.104 -2.073 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.051 3.949 3 N -0.263 5.263 4 C 0.041 3.959 5 C -0.225 4.225 6 C 0.176 3.824 7 O -0.285 6.285 8 N -0.278 5.278 9 C -0.083 4.083 10 C 0.009 3.991 11 H 0.049 0.951 12 C -0.640 4.640 13 H 0.065 0.935 14 C -0.224 4.224 15 N -0.570 5.570 16 Si 0.930 3.070 17 H -0.210 1.210 18 H -0.192 1.192 19 H -0.207 1.207 20 C -0.112 4.112 21 H 0.118 0.882 22 H 0.114 0.886 23 H 0.121 0.879 24 H 0.286 0.714 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.579 -8.046 -1.422 10.490 hybrid contribution 0.955 -0.996 -0.871 1.632 sum -5.624 -9.042 -2.293 10.893 Atomic orbital electron populations 1.20686 0.82174 1.05271 1.05149 1.23846 0.99581 0.81357 0.90083 1.67594 1.09674 1.31542 1.17445 1.22449 0.89216 0.96764 0.87440 1.22461 1.00698 0.94031 1.05273 1.19059 0.86711 0.85124 0.91495 1.84613 1.74442 1.33610 1.35871 1.67904 1.09041 1.31892 1.18998 1.20804 0.88529 0.97713 1.01279 1.19617 0.91447 0.91853 0.96134 0.95087 1.22208 1.54200 0.94849 0.92739 0.93491 1.27012 0.93079 0.92081 1.10230 1.70907 1.46879 1.30699 1.08511 0.83044 0.77562 0.76150 0.70291 1.21000 1.19238 1.20691 1.21392 0.94478 0.94417 1.00891 0.88182 0.88600 0.87948 0.71379 0.89784 0.90419 0.92299 0.91341 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 10.32 71.24 0.73 -1.04 15 2 C 0.32 11.25 7.64 138.77 1.06 12.31 15 3 N -0.55 -22.56 10.33 -175.80 -1.82 -24.38 15 4 C 0.19 8.14 7.37 42.55 0.31 8.45 15 5 C -0.22 -8.83 6.16 -19.53 -0.12 -8.95 15 6 C 0.36 13.19 7.84 84.80 0.66 13.86 15 7 O -0.48 -13.94 13.57 -88.12 -1.20 -15.14 15 8 N -0.55 -19.87 10.36 -300.72 -3.12 -22.99 15 9 C -0.05 -1.79 6.28 30.44 0.19 -1.59 15 10 C 0.03 1.35 2.64 -10.58 -0.03 1.32 15 11 H 0.03 1.51 8.09 -2.39 -0.02 1.50 15 12 C -0.60 -31.97 8.58 25.60 0.22 -31.75 15 13 H 0.05 2.47 7.59 -2.91 -0.02 2.45 15 14 C -0.02 -1.34 5.12 84.65 0.43 -0.91 15 15 N -0.93 -54.05 12.90 21.45 0.28 -53.77 15 16 Si 1.11 48.77 29.90 68.60 2.05 50.82 15 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 19 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 20 C -0.07 -3.39 5.26 30.47 0.16 -3.23 15 21 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.10 2.07 8.14 -2.38 -0.02 2.05 15 23 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.42 8.14 9.06 -74.05 -0.67 7.47 15 25 H 0.08 2.95 8.14 -2.39 -0.02 2.93 15 26 H 0.08 2.96 7.76 -2.38 -0.02 2.94 15 27 H 0.27 15.22 5.96 -92.71 -0.55 14.67 15 28 H 0.07 3.62 6.19 -2.39 -0.01 3.60 15 29 H 0.08 3.44 8.14 -2.39 -0.02 3.42 15 Total: -1.00 -65.75 250.96 0.55 -65.19 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.73 Total: 11.79 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 3.63 Total: -11.53 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -4.66 Total: -101.14 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -1.20 Total: -15.14 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.05 Total: 50.82 kcal Total: -65.75 0.55 -65.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773467.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.482 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds