Wall clock time and date at job start Mon Mar 30 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31762 * 119.06592 * 2 1 4 4 C 1.32617 * 120.96407 * 180.28322 * 3 2 1 5 5 C 1.38061 * 119.03841 * 0.02562 * 4 3 2 6 6 C 1.39329 * 118.55178 * 359.97438 * 5 4 3 7 7 O 1.35521 * 120.54112 * 180.02562 * 6 5 4 8 8 N 1.31774 * 119.05714 * 180.27462 * 2 1 3 9 9 C 1.51054 * 109.94872 * 179.97438 * 5 4 3 10 10 C 1.54434 * 105.12875 * 342.98726 * 9 5 4 11 11 C 1.51188 * 131.21447 * 180.02562 * 4 3 2 12 12 H 1.08997 * 110.30207 * 315.96966 * 11 4 3 13 13 C 1.50703 * 110.30104 * 78.11447 * 11 4 3 14 14 H 1.08005 * 119.99922 * 118.54051 * 13 11 4 15 15 C 1.37876 * 119.99890 * 298.55129 * 13 11 4 16 16 N 1.31512 * 120.00037 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99972 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47082 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46893 * 119.99337 * 17 15 13 20 20 H 1.48500 * 109.47070 * 239.99480 * 17 15 13 21 21 H 1.08993 * 109.47169 * 269.73250 * 1 2 3 22 22 H 1.09002 * 109.46938 * 29.72712 * 1 2 3 23 23 H 1.08998 * 109.47230 * 149.72516 * 1 2 3 24 24 H 0.96701 * 113.99831 * 269.98238 * 7 6 5 25 25 H 1.08994 * 110.31124 * 101.89692 * 9 5 4 26 26 H 1.08998 * 110.30847 * 224.07254 * 9 5 4 27 27 H 1.09003 * 110.81625 * 267.84157 * 10 9 5 28 28 H 1.08997 * 110.99128 * 144.36907 * 10 9 5 29 29 H 0.97004 * 119.99920 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1517 0.0000 4 6 3.4725 1.1956 -0.0056 5 6 4.1823 0.0114 -0.0121 6 6 3.4749 -1.1889 -0.0119 7 8 4.1308 -2.3748 -0.0176 8 7 2.1470 -1.1519 -0.0055 9 6 5.6651 0.2993 -0.0183 10 6 5.7870 1.7767 -0.4512 11 6 4.4304 2.3653 -0.0064 12 1 4.0984 3.1256 -0.7134 13 6 4.5425 2.9503 1.3779 14 1 5.4951 2.9545 1.8869 15 6 3.4290 3.4800 1.9946 16 7 2.2691 3.4752 1.3747 17 14 3.5677 4.2045 3.7108 18 1 4.9701 4.0884 4.1853 19 1 3.1730 5.6358 3.6773 20 1 2.6702 3.4650 4.6344 21 1 -0.3633 -0.0048 1.0276 22 1 -0.3633 0.8924 -0.5096 23 1 -0.3633 -0.8875 -0.5181 24 1 4.3171 -2.7170 -0.9026 25 1 6.0814 0.1620 0.9796 26 1 6.1731 -0.3477 -0.7334 27 1 5.9079 1.8551 -1.5317 28 1 6.6109 2.2685 0.0660 29 1 1.4858 3.8482 1.8085 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259785780.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:57 Heat of formation + Delta-G solvation = 3.305326 kcal Electronic energy + Delta-G solvation = -14988.268643 eV Core-core repulsion = 12490.662769 eV Total energy + Delta-G solvation = -2497.605874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51735 -37.10706 -36.36994 -32.57963 -31.67665 -30.54659 -28.27213 -26.29286 -24.13025 -22.84237 -20.75682 -19.76878 -17.95934 -17.14239 -16.58447 -15.15083 -14.51975 -14.11305 -13.71860 -13.47596 -13.10606 -12.50918 -12.39099 -11.97786 -11.82144 -11.37335 -11.33353 -11.07905 -10.82878 -10.54638 -10.47483 -9.89960 -9.68042 -9.45975 -8.98373 -8.52000 -8.05326 -7.99826 -6.01346 -4.16107 1.75396 2.05586 3.26133 3.34496 3.37060 4.02225 4.36321 4.64087 4.85662 5.14329 5.31280 5.39673 5.66027 5.80468 5.89736 6.07705 6.12862 6.18074 6.38107 6.50770 6.67041 6.73217 6.75068 6.92314 7.37742 7.44715 7.81639 7.86766 8.05872 8.15650 8.82490 9.21835 9.47613 10.98223 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.012486 C = 0.009801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.572306 B = 2241.934138 C = 2856.050365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.310 3.690 3 N -0.459 5.459 4 C 0.241 3.759 5 C -0.245 4.245 6 C 0.339 3.661 7 O -0.483 6.483 8 N -0.565 5.565 9 C -0.051 4.051 10 C -0.115 4.115 11 C 0.087 3.913 12 H 0.048 0.952 13 C -0.526 4.526 14 H 0.066 0.934 15 C 0.064 3.936 16 N -0.833 5.833 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.285 1.285 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.391 0.609 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 -5.752 -4.532 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.043 3.957 3 N -0.173 5.173 4 C 0.096 3.904 5 C -0.251 4.251 6 C 0.154 3.846 7 O -0.288 6.288 8 N -0.292 5.292 9 C -0.089 4.089 10 C -0.153 4.153 11 C 0.068 3.932 12 H 0.065 0.935 13 C -0.564 4.564 14 H 0.084 0.916 15 C -0.144 4.144 16 N -0.466 5.466 17 Si 0.715 3.285 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.212 1.212 21 H 0.094 0.906 22 H 0.102 0.898 23 H 0.091 0.909 24 H 0.247 0.753 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.562 -5.688 -3.916 6.928 hybrid contribution 0.797 0.015 0.769 1.107 sum 1.359 -5.672 -3.147 6.628 Atomic orbital electron populations 1.20377 0.86680 1.02953 1.03053 1.23054 0.97610 0.82677 0.92382 1.67927 1.10142 1.27036 1.12234 1.23167 0.88750 0.95827 0.82686 1.22360 0.99850 0.94593 1.08299 1.18882 0.86814 0.84058 0.94845 1.84727 1.75186 1.35798 1.33103 1.67619 1.08988 1.32514 1.20033 1.20621 0.89989 0.97081 1.01239 1.22412 0.99697 0.94171 0.99033 1.18408 0.86294 0.90034 0.98493 0.93457 1.20916 0.95719 1.39573 1.00239 0.91620 1.25148 0.95606 0.95759 0.97883 1.70136 0.99001 1.41003 1.36478 0.86593 0.78270 0.78942 0.84648 1.19639 1.20718 1.21163 0.90597 0.89805 0.90893 0.75274 0.90599 0.92332 0.92850 0.90587 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.32 36.00 0.37 -0.88 15 2 C 0.31 6.91 7.64 -157.24 -1.20 5.71 15 3 N -0.46 -11.55 8.79 -6.92 -0.06 -11.62 15 4 C 0.24 5.97 6.08 -82.08 -0.50 5.47 15 5 C -0.24 -5.35 6.16 -104.11 -0.64 -5.99 15 6 C 0.34 7.13 7.84 -16.71 -0.13 6.99 15 7 O -0.48 -8.34 13.57 -18.26 -0.25 -8.59 15 8 N -0.57 -12.35 10.36 -10.79 -0.11 -12.46 15 9 C -0.05 -0.95 6.75 -26.96 -0.18 -1.13 15 10 C -0.12 -2.22 6.59 -25.24 -0.17 -2.39 15 11 C 0.09 2.12 2.82 -91.94 -0.26 1.86 15 12 H 0.05 1.23 8.14 -51.93 -0.42 0.81 15 13 C -0.53 -14.02 8.54 -34.44 -0.29 -14.32 15 14 H 0.07 1.71 7.57 -52.48 -0.40 1.31 15 15 C 0.06 1.74 5.32 -17.82 -0.09 1.64 15 16 N -0.83 -23.52 11.32 55.43 0.63 -22.89 15 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 15 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 15 21 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 22 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.39 4.48 9.06 45.56 0.41 4.90 15 25 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 28 H 0.08 1.39 7.74 -51.93 -0.40 0.99 15 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 LS Contribution 252.62 15.07 3.81 3.81 Total: -1.00 -31.53 252.62 -6.59 -38.12 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -2.48 Total: 0.58 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.10 Total: -3.03 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.45 Total: -46.97 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.25 Total: -8.59 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.53 -6.59 -38.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785780.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.425 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds