Wall clock time and date at job start Mon Mar 30 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31391 * 125.21521 * 2 1 4 4 C 1.32017 * 109.64596 * 180.30834 * 3 2 1 5 5 C 1.38984 * 107.52718 * 359.89176 * 4 3 2 6 6 N 1.34866 * 125.20894 * 179.81225 * 2 1 3 7 7 H 0.97001 * 126.59697 * 359.79686 * 6 2 1 8 8 C 1.41333 * 122.36176 * 179.75628 * 5 4 3 9 9 O 1.21421 * 121.19229 * 177.40224 * 8 5 4 10 10 C 1.51343 * 117.61572 * 357.41715 * 8 5 4 11 11 C 1.52852 * 110.15753 * 32.30425 * 10 8 5 12 12 H 1.08993 * 109.26213 * 60.57533 * 11 10 8 13 13 C 1.50700 * 109.26511 * 180.02562 * 11 10 8 14 14 H 1.08000 * 120.00262 * 119.99849 * 13 11 10 15 15 C 1.37879 * 120.00056 * 299.99919 * 13 11 10 16 16 N 1.31515 * 119.99655 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00068 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47523 * 89.99605 * 17 15 13 19 19 H 1.48501 * 109.46947 * 209.99571 * 17 15 13 20 20 H 1.48500 * 109.46992 * 329.99410 * 17 15 13 21 21 C 1.50771 * 130.18769 * 180.02562 * 4 3 2 22 22 H 1.09001 * 109.46995 * 270.18449 * 1 2 3 23 23 H 1.08994 * 109.47046 * 30.18053 * 1 2 3 24 24 H 1.09000 * 109.47017 * 150.18550 * 1 2 3 25 25 H 1.09007 * 109.35730 * 152.51116 * 10 8 5 26 26 H 1.09000 * 109.36197 * 272.09428 * 10 8 5 27 27 H 0.96998 * 119.99691 * 180.02562 * 16 15 13 28 28 H 1.08998 * 109.76044 * 34.02909 * 21 4 3 29 29 H 1.08999 * 109.80041 * 273.30414 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2647 1.0735 0.0000 4 6 3.5365 0.7191 -0.0067 5 6 3.5840 -0.6699 -0.0087 6 7 2.2847 -1.1019 0.0036 7 1 1.9818 -2.0234 0.0094 8 6 4.8029 -1.3852 -0.0207 9 8 4.8206 -2.5984 0.0249 10 6 6.0853 -0.5847 -0.0919 11 6 5.9133 0.7511 0.6309 12 1 5.6737 0.5652 1.6778 13 6 7.2001 1.5310 0.5471 14 1 7.2142 2.4999 0.0702 15 6 8.3593 1.0077 1.0794 16 7 8.3420 -0.1719 1.6606 17 14 9.9541 1.9748 0.9762 18 1 10.0876 2.8390 2.1764 19 1 11.1008 1.0332 0.9143 20 1 9.9419 2.8208 -0.2441 21 6 4.7828 1.5675 -0.0090 22 1 -0.3633 0.0033 1.0277 23 1 -0.3633 0.8883 -0.5166 24 1 -0.3633 -0.8917 -0.5110 25 1 6.8902 -1.1492 0.3789 26 1 6.3388 -0.4005 -1.1359 27 1 9.1574 -0.5400 2.0353 28 1 4.6115 2.4756 0.5690 29 1 5.0504 1.8278 -1.0331 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802979.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:15 Heat of formation + Delta-G solvation = -18.474317 kcal Electronic energy + Delta-G solvation = -14650.792499 eV Core-core repulsion = 12152.242189 eV Total energy + Delta-G solvation = -2498.550310 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.44505 -40.00578 -37.32599 -34.44604 -33.60763 -32.08411 -29.55603 -28.59861 -26.59298 -23.09971 -22.56193 -21.94532 -19.75200 -18.77671 -18.08594 -16.88207 -16.58499 -16.38527 -15.58264 -15.43753 -15.03361 -14.54555 -14.22170 -13.96612 -13.51592 -13.29652 -13.05796 -12.84123 -12.48562 -12.30665 -11.91626 -11.66968 -11.47362 -11.04884 -11.00132 -10.61143 -10.40274 -9.32269 -8.09872 -6.25030 -0.12696 1.48214 1.49670 1.59749 1.64860 1.88507 2.07326 2.46638 3.18315 3.22345 3.57782 3.89081 4.10758 4.33773 4.50753 4.53960 4.74484 4.78962 4.81952 4.88226 4.99250 5.10777 5.28492 5.45861 5.60612 5.80055 5.96535 6.27113 6.31526 6.52390 6.86316 6.89062 7.45235 8.95783 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.049593 B = 0.007943 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.460691 B = 3524.444322 C = 3975.811729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.246 3.754 3 N -0.520 5.520 4 C 0.107 3.893 5 C -0.168 4.168 6 N -0.520 5.520 7 H 0.437 0.563 8 C 0.430 3.570 9 O -0.528 6.528 10 C -0.140 4.140 11 C 0.059 3.941 12 H -0.002 1.002 13 C -0.528 4.528 14 H 0.072 0.928 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.961 3.039 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.261 1.261 21 C -0.030 4.030 22 H 0.103 0.897 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 0.612 -4.073 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.017 4.017 3 N -0.241 5.241 4 C -0.032 4.032 5 C -0.282 4.282 6 N -0.122 5.122 7 H 0.278 0.722 8 C 0.315 3.685 9 O -0.410 6.410 10 C -0.178 4.178 11 C 0.040 3.960 12 H 0.016 0.984 13 C -0.566 4.566 14 H 0.090 0.910 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.185 1.185 21 C -0.068 4.068 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.125 0.875 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.586 0.647 -3.956 14.165 hybrid contribution 1.347 -1.109 0.277 1.767 sum -12.239 -0.462 -3.679 12.788 Atomic orbital electron populations 1.20585 0.79988 1.06349 1.05694 1.24828 0.97717 0.80249 0.98856 1.69660 1.01887 1.29590 1.22931 1.22209 0.93795 0.91021 0.96215 1.20571 0.87059 0.96846 1.23761 1.42641 1.04797 1.11127 1.53681 0.72192 1.21113 0.90310 0.87939 0.69125 1.90445 1.90855 1.17336 1.42397 1.22061 0.94109 0.99308 1.02348 1.18581 0.93216 0.90612 0.93561 0.98378 1.21476 0.93336 1.04251 1.37547 0.91018 1.25809 1.02535 0.95780 0.94523 1.69993 1.29019 1.18256 1.38803 0.85506 0.78685 0.78330 0.78855 1.20337 1.21456 1.18526 1.20291 0.87318 0.96851 1.02382 0.87815 0.87667 0.87495 0.88865 0.89398 0.92856 0.90041 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.51 71.24 0.75 -0.18 15 2 C 0.25 6.63 8.10 137.93 1.12 7.75 15 3 N -0.52 -18.19 11.17 -174.02 -1.94 -20.13 15 4 C 0.11 4.21 7.14 42.73 0.31 4.52 15 5 C -0.17 -6.67 7.00 39.29 0.27 -6.40 15 6 N -0.52 -15.51 6.17 -179.24 -1.11 -16.62 15 7 H 0.44 10.21 8.96 -92.71 -0.83 9.38 15 8 C 0.43 19.60 6.92 26.65 0.18 19.78 15 9 O -0.53 -25.73 17.91 -3.47 -0.06 -25.79 15 10 C -0.14 -6.80 5.11 30.00 0.15 -6.65 15 11 C 0.06 2.92 2.05 -11.45 -0.02 2.90 15 12 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 13 C -0.53 -27.54 8.55 25.60 0.22 -27.32 15 14 H 0.07 3.54 7.74 -2.91 -0.02 3.52 15 15 C 0.01 0.66 5.30 84.66 0.45 1.11 15 16 N -0.92 -52.75 11.30 21.45 0.24 -52.50 15 17 Si 0.96 42.21 29.54 68.60 2.03 44.23 15 18 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 19 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 21 C -0.03 -1.25 5.52 30.01 0.17 -1.08 15 22 H 0.10 1.12 8.14 -2.39 -0.02 1.10 15 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.11 0.84 8.14 -2.39 -0.02 0.82 15 25 H 0.09 5.20 6.03 -2.38 -0.01 5.18 15 26 H 0.09 4.03 8.14 -2.39 -0.02 4.01 15 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 15 28 H 0.08 3.23 8.14 -2.39 -0.02 3.21 15 29 H 0.09 3.50 8.14 -2.39 -0.02 3.48 15 Total: -1.00 -67.50 251.67 3.10 -64.40 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.35 Total: 11.98 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 3.59 Total: -5.57 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -2.81 Total: -89.26 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.06 Total: -25.79 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -67.50 3.10 -64.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802979.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.928 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds