Wall clock time and date at job start Mon Mar 30 2020 03:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 119.99831 * 2 1 4 4 N 1.34771 * 119.99890 * 179.72025 * 2 1 3 5 5 C 1.46509 * 120.00009 * 174.93270 * 4 2 1 6 6 H 1.08996 * 109.46821 * 34.08487 * 5 4 2 7 7 C 1.50701 * 109.47173 * 154.08204 * 5 4 2 8 8 H 1.08003 * 119.99347 * 119.99725 * 7 5 4 9 9 C 1.37874 * 120.00188 * 300.00048 * 7 5 4 10 10 N 1.31515 * 119.99938 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00012 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46870 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47291 * 120.00078 * 11 9 7 14 14 H 1.48502 * 109.47138 * 240.00162 * 11 9 7 15 15 C 1.50702 * 109.46838 * 274.08485 * 5 4 2 16 16 C 1.38648 * 120.78920 * 319.69926 * 15 5 4 17 17 C 1.38208 * 119.16179 * 179.75698 * 16 15 5 18 18 N 1.31866 * 120.75944 * 0.53022 * 17 16 15 19 19 C 1.31862 * 121.73137 * 359.74463 * 18 17 16 20 20 C 1.38204 * 120.76600 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.47225 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46888 * 120.00353 * 1 2 3 23 23 H 1.08995 * 109.47836 * 239.99995 * 1 2 3 24 24 H 0.97001 * 120.00449 * 354.92749 * 4 2 1 25 25 H 0.96999 * 120.00074 * 180.02562 * 10 9 7 26 26 H 1.08002 * 120.41861 * 0.02562 * 16 15 5 27 27 H 1.07995 * 119.61822 * 180.25149 * 17 16 15 28 28 H 1.08005 * 119.62442 * 179.97438 * 19 18 17 29 29 H 1.07998 * 120.42495 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0057 5 6 3.6416 -1.1702 -0.1064 6 1 4.0464 -0.2927 0.3977 7 6 4.1921 -2.4172 0.5363 8 1 4.7684 -3.1175 -0.0501 9 6 3.9601 -2.6640 1.8728 10 7 3.2587 -1.8109 2.5869 11 14 4.6431 -4.2093 2.6696 12 1 5.3912 -4.9984 1.6582 13 1 5.5561 -3.8325 3.7784 14 1 3.5244 -5.0259 3.2053 15 6 4.0338 -1.1396 -1.5611 16 6 3.3385 -1.8869 -2.4995 17 6 3.7239 -1.8299 -3.8255 18 7 4.7455 -1.0846 -4.1995 19 6 5.4329 -0.3655 -3.3340 20 6 5.1022 -0.3681 -1.9921 21 1 -0.3634 1.0277 -0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 -0.3634 -0.5138 0.8899 24 1 1.6987 -2.0052 0.0841 25 1 3.0958 -1.9843 3.5273 26 1 2.5036 -2.5024 -2.1987 27 1 3.1850 -2.4058 -4.5632 28 1 6.2640 0.2326 -3.6776 29 1 5.6687 0.2233 -1.2881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260011889.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:45 Heat of formation + Delta-G solvation = -14.890099 kcal Electronic energy + Delta-G solvation = -14679.094544 eV Core-core repulsion = 12180.699657 eV Total energy + Delta-G solvation = -2498.394887 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.57410 -38.25364 -34.85433 -32.23618 -31.60221 -30.52885 -29.13392 -26.78980 -23.73798 -22.76354 -20.97485 -19.29256 -17.09704 -16.23252 -15.81541 -15.48024 -14.93121 -14.69250 -14.16945 -14.06000 -13.24841 -13.03779 -12.64306 -12.34207 -12.02111 -11.90261 -11.43590 -11.13055 -10.95657 -10.84489 -10.25849 -9.76665 -9.13260 -8.94464 -8.73700 -8.57054 -8.52395 -7.77892 -6.31976 -4.48106 1.78036 2.02164 3.12112 3.22477 3.26484 3.68724 4.17268 4.34926 4.59510 4.98317 5.13140 5.45328 5.61711 5.71824 5.81014 5.88676 5.89106 5.99900 6.27624 6.35182 6.37362 6.83568 6.91569 7.33070 7.39180 7.55333 7.73415 7.89866 8.53571 8.60801 8.86123 9.22471 9.39626 10.71917 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.012060 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.848330 B = 2321.099160 C = 3183.463915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.502 3.498 3 O -0.574 6.574 4 N -0.684 5.684 5 C 0.295 3.705 6 H 0.065 0.935 7 C -0.535 4.535 8 H 0.067 0.933 9 C 0.076 3.924 10 N -0.862 5.862 11 Si 0.900 3.100 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.281 1.281 15 C -0.008 4.008 16 C -0.164 4.164 17 C 0.082 3.918 18 N -0.507 5.507 19 C 0.086 3.914 20 C -0.166 4.166 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.389 0.611 25 H 0.266 0.734 26 H 0.126 0.874 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 -1.509 -5.433 6.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.288 3.712 3 O -0.455 6.455 4 N -0.331 5.331 5 C 0.193 3.807 6 H 0.083 0.917 7 C -0.573 4.573 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.497 5.497 11 Si 0.726 3.274 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.017 4.017 16 C -0.184 4.184 17 C -0.074 4.074 18 N -0.217 5.217 19 C -0.071 4.071 20 C -0.187 4.187 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.222 0.778 25 H 0.076 0.924 26 H 0.144 0.856 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.344 -0.713 -6.138 6.609 hybrid contribution -0.221 -1.282 1.605 2.066 sum -2.564 -1.995 -4.533 5.577 Atomic orbital electron populations 1.21908 0.94353 1.03921 1.03159 1.20568 0.89655 0.84695 0.76309 1.90603 1.70919 1.31926 1.52027 1.46617 1.08720 1.07009 1.70716 1.17660 0.78328 0.99547 0.85127 0.91726 1.21156 1.35267 1.06267 0.94621 0.91476 1.25103 0.94211 0.96877 0.96970 1.70056 1.36824 1.34774 1.08042 0.86412 0.78991 0.82524 0.79430 1.19444 1.20653 1.20707 1.21348 0.91858 0.89959 0.98517 1.21892 1.01834 1.00956 0.93695 1.22548 0.93891 0.96427 0.94570 1.67540 1.07358 1.07888 1.38907 1.22538 0.98117 0.96551 0.89870 1.22014 0.98997 1.00834 0.96841 0.90330 0.90627 0.90153 0.77768 0.92442 0.85554 0.83868 0.83699 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.32 36.00 0.37 -2.35 15 2 C 0.50 10.85 7.90 -10.99 -0.09 10.77 15 3 O -0.57 -14.82 16.70 5.56 0.09 -14.73 15 4 N -0.68 -14.79 3.71 -56.07 -0.21 -15.00 15 5 C 0.30 7.04 2.13 -70.23 -0.15 6.89 15 6 H 0.07 1.80 7.38 -51.93 -0.38 1.41 15 7 C -0.53 -13.33 8.61 -34.44 -0.30 -13.62 15 8 H 0.07 1.68 7.74 -52.48 -0.41 1.28 15 9 C 0.08 1.90 5.39 -17.82 -0.10 1.80 15 10 N -0.86 -22.81 12.77 55.43 0.71 -22.10 15 11 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 15 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 15 C -0.01 -0.16 4.89 -104.32 -0.51 -0.67 15 16 C -0.16 -3.08 9.43 -39.44 -0.37 -3.45 15 17 C 0.08 1.43 11.18 -17.55 -0.20 1.23 15 18 N -0.51 -9.38 10.36 -13.25 -0.14 -9.52 15 19 C 0.09 1.53 11.18 -17.55 -0.20 1.33 15 20 C -0.17 -3.30 9.78 -39.44 -0.39 -3.68 15 21 H 0.08 1.18 8.12 -51.93 -0.42 0.76 15 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.39 7.76 8.61 -40.82 -0.35 7.41 15 25 H 0.27 6.71 8.31 -40.82 -0.34 6.37 15 26 H 0.13 2.17 7.81 -52.49 -0.41 1.76 15 27 H 0.14 2.00 8.06 -52.49 -0.42 1.58 15 28 H 0.15 2.10 8.06 -52.48 -0.42 1.68 15 29 H 0.13 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 263.62 15.07 3.97 3.97 Total: -1.00 -30.19 263.62 -5.73 -35.92 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -3.22 Total: 8.71 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.92 Total: -1.76 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.36 Total: -46.62 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.73 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.19 -5.73 -35.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011889.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.031 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds