Wall clock time and date at job start Mon Mar 30 2020 02:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35894 * 116.99853 * 2 1 4 4 C 1.38895 * 120.07136 * 359.97438 * 3 2 1 5 5 C 1.38158 * 119.70124 * 179.72628 * 4 3 2 6 6 C 1.37999 * 120.41474 * 0.41432 * 5 4 3 7 7 C 1.39301 * 120.35476 * 0.02562 * 6 5 4 8 8 C 1.38192 * 120.06213 * 180.29739 * 3 2 1 9 9 C 1.51626 * 132.18156 * 359.45020 * 8 3 2 10 10 H 1.08998 * 110.94209 * 314.00826 * 9 8 3 11 11 C 1.50702 * 110.94322 * 77.70004 * 9 8 3 12 12 H 1.07994 * 119.99869 * 0.02562 * 11 9 8 13 13 C 1.37878 * 120.00161 * 179.97438 * 11 9 8 14 14 N 1.31520 * 119.99687 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00077 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46985 * 60.00085 * 15 13 11 17 17 H 1.48504 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47123 * 299.99914 * 15 13 11 19 19 C 1.54711 * 101.92081 * 195.85786 * 9 8 3 20 20 O 1.36147 * 129.86203 * 179.04728 * 7 6 5 21 21 H 1.08996 * 109.46773 * 60.00053 * 1 2 3 22 22 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46767 * 300.00278 * 1 2 3 24 24 H 1.08002 * 120.15144 * 0.02562 * 4 3 2 25 25 H 1.08007 * 119.79150 * 180.39651 * 5 4 3 26 26 H 1.07992 * 119.82555 * 180.02562 * 6 5 4 27 27 H 0.97003 * 119.99244 * 180.02562 * 14 13 11 28 28 H 1.08998 * 110.75292 * 93.04317 * 19 9 8 29 29 H 1.08998 * 110.75533 * 216.40613 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2909 2.3766 -0.0005 5 6 1.9261 3.6036 0.0052 6 6 3.3041 3.6769 0.0028 7 6 4.0709 2.5140 -0.0059 8 6 3.4259 1.2847 -0.0062 9 6 4.5027 0.2172 -0.0029 10 1 4.2844 -0.5540 0.7357 11 6 4.6685 -0.3849 -1.3745 12 1 4.0564 -0.0383 -2.1939 13 6 5.6023 -1.3775 -1.5833 14 7 6.3488 -1.7986 -0.5857 15 14 5.8083 -2.1234 -3.2836 16 1 6.1927 -1.0607 -4.2470 17 1 6.8692 -3.1617 -3.2434 18 1 4.5273 -2.7401 -3.7120 19 6 5.7565 1.0292 0.3997 20 8 5.4236 2.3609 -0.0270 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2122 2.3243 -0.0005 25 1 1.3403 4.5110 0.0113 26 1 3.7907 4.6410 0.0078 27 1 7.0060 -2.4967 -0.7328 28 1 5.9077 0.9965 1.4786 29 1 6.6386 0.6639 -0.1262 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260059590.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:59 Heat of formation + Delta-G solvation = -44.363561 kcal Electronic energy + Delta-G solvation = -14867.468871 eV Core-core repulsion = 12335.503168 eV Total energy + Delta-G solvation = -2531.965703 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.29554 -38.45323 -35.77012 -33.33865 -30.98071 -28.94949 -28.33061 -26.67758 -24.90330 -22.20841 -21.23537 -20.35807 -17.54929 -16.40900 -16.10102 -15.45863 -15.20984 -14.93837 -14.49077 -14.35183 -13.99349 -12.62789 -12.34891 -12.18212 -12.03981 -11.68289 -11.14816 -10.98643 -10.89821 -10.74148 -10.52103 -10.27357 -10.08852 -9.56559 -9.31916 -8.49130 -7.53847 -7.35760 -6.09554 -4.13843 2.00180 2.07513 3.31752 3.34908 3.39231 3.84069 4.25020 4.36015 4.48391 5.20738 5.26829 5.43872 5.45263 5.50893 5.71964 5.77768 6.01366 6.08917 6.22345 6.37966 6.54816 6.85854 6.93053 6.99447 7.19259 7.32535 7.53553 7.84843 7.93990 8.10440 8.27783 8.87463 9.49976 10.98329 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.011119 C = 0.008990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.685049 B = 2517.574205 C = 3113.932521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.302 6.302 3 C 0.166 3.834 4 C -0.250 4.250 5 C -0.068 4.068 6 C -0.188 4.188 7 C 0.144 3.856 8 C -0.171 4.171 9 C 0.071 3.929 10 H 0.056 0.944 11 C -0.497 4.497 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.058 3.942 20 O -0.310 6.310 21 H 0.049 0.951 22 H 0.093 0.907 23 H 0.048 0.952 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.265 0.735 28 H 0.046 0.954 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 6.002 2.069 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.121 3.879 4 C -0.269 4.269 5 C -0.086 4.086 6 C -0.207 4.207 7 C 0.097 3.903 8 C -0.173 4.173 9 C 0.052 3.948 10 H 0.073 0.927 11 C -0.534 4.534 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.016 4.016 20 O -0.224 6.224 21 H 0.068 0.932 22 H 0.112 0.888 23 H 0.067 0.933 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.065 5.806 2.054 10.148 hybrid contribution -0.152 -0.490 -0.873 1.013 sum -8.218 5.316 1.181 9.858 Atomic orbital electron populations 1.22957 0.79927 1.03214 1.00576 1.86240 1.19881 1.26941 1.88396 1.18190 0.90368 0.83917 0.95463 1.20940 0.99142 0.92210 1.14620 1.20359 0.93119 0.96680 0.98431 1.20010 0.92799 0.95840 1.12088 1.19433 0.84392 0.93261 0.93209 1.20681 0.92217 0.97286 1.07096 1.18882 0.85574 0.91522 0.98801 0.92655 1.20864 1.19787 1.19166 0.93621 0.92318 1.24980 0.95583 0.96151 0.97308 1.69915 1.22975 1.29490 1.30941 0.86532 0.77833 0.78847 0.84156 1.20107 1.21140 1.20111 1.24130 1.02666 0.77598 0.97233 1.86739 1.17562 1.36192 1.81905 0.93194 0.88843 0.93334 0.86027 0.86023 0.86349 0.92576 0.93624 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 15 2 O -0.30 -6.16 10.49 -19.41 -0.20 -6.37 15 3 C 0.17 3.50 6.67 -39.35 -0.26 3.23 15 4 C -0.25 -4.31 9.05 -39.37 -0.36 -4.67 15 5 C -0.07 -1.10 10.01 -39.70 -0.40 -1.50 15 6 C -0.19 -3.49 10.06 -39.27 -0.40 -3.89 15 7 C 0.14 3.23 7.03 -38.97 -0.27 2.96 15 8 C -0.17 -4.08 5.53 -103.97 -0.57 -4.65 15 9 C 0.07 1.86 2.94 -91.57 -0.27 1.59 15 10 H 0.06 1.55 8.14 -51.93 -0.42 1.13 15 11 C -0.50 -14.10 8.55 -34.44 -0.29 -14.39 15 12 H 0.06 1.71 7.78 -52.49 -0.41 1.30 15 13 C 0.06 1.71 5.16 -17.82 -0.09 1.61 15 14 N -0.89 -25.35 12.38 55.43 0.69 -24.67 15 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 15 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 19 C 0.06 1.43 7.22 38.06 0.27 1.70 15 20 O -0.31 -7.42 11.10 -20.21 -0.22 -7.65 15 21 H 0.05 0.62 7.66 -51.93 -0.40 0.22 15 22 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.05 0.58 7.67 -51.93 -0.40 0.18 15 24 H 0.12 1.69 6.32 -52.49 -0.33 1.36 15 25 H 0.12 1.51 8.06 -52.48 -0.42 1.09 15 26 H 0.12 1.90 8.06 -52.49 -0.42 1.47 15 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 29 H 0.11 2.94 7.02 -51.93 -0.36 2.58 15 LS Contribution 252.15 15.07 3.80 3.80 Total: -1.00 -30.43 252.15 -5.76 -36.19 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.15 Total: -1.28 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.65 Total: -16.60 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.69 Total: -24.67 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.43 Total: -14.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.43 -5.76 -36.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059590.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.171 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds