Wall clock time and date at job start Mon Mar 30 2020 02:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35894 * 116.99853 * 2 1 4 4 C 1.38895 * 120.07136 * 359.97438 * 3 2 1 5 5 C 1.38158 * 119.70124 * 179.72628 * 4 3 2 6 6 C 1.37999 * 120.41474 * 0.41432 * 5 4 3 7 7 C 1.39301 * 120.35476 * 0.02562 * 6 5 4 8 8 C 1.38192 * 120.06213 * 180.29739 * 3 2 1 9 9 C 1.51626 * 132.18156 * 359.45020 * 8 3 2 10 10 H 1.08998 * 110.94209 * 314.00826 * 9 8 3 11 11 C 1.50702 * 110.94322 * 77.70004 * 9 8 3 12 12 H 1.07994 * 119.99869 * 0.02562 * 11 9 8 13 13 C 1.37878 * 120.00161 * 179.97438 * 11 9 8 14 14 N 1.31520 * 119.99687 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00077 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46985 * 60.00085 * 15 13 11 17 17 H 1.48504 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47123 * 299.99914 * 15 13 11 19 19 C 1.54711 * 101.92081 * 195.85786 * 9 8 3 20 20 O 1.36147 * 129.86203 * 179.04728 * 7 6 5 21 21 H 1.08996 * 109.46773 * 60.00053 * 1 2 3 22 22 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46767 * 300.00278 * 1 2 3 24 24 H 1.08002 * 120.15144 * 0.02562 * 4 3 2 25 25 H 1.08007 * 119.79150 * 180.39651 * 5 4 3 26 26 H 1.07992 * 119.82555 * 180.02562 * 6 5 4 27 27 H 0.97003 * 119.99244 * 180.02562 * 14 13 11 28 28 H 1.08998 * 110.75292 * 93.04317 * 19 9 8 29 29 H 1.08998 * 110.75533 * 216.40613 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2909 2.3766 -0.0005 5 6 1.9261 3.6036 0.0052 6 6 3.3041 3.6769 0.0028 7 6 4.0709 2.5140 -0.0059 8 6 3.4259 1.2847 -0.0062 9 6 4.5027 0.2172 -0.0029 10 1 4.2844 -0.5540 0.7357 11 6 4.6685 -0.3849 -1.3745 12 1 4.0564 -0.0383 -2.1939 13 6 5.6023 -1.3775 -1.5833 14 7 6.3488 -1.7986 -0.5857 15 14 5.8083 -2.1234 -3.2836 16 1 6.1927 -1.0607 -4.2470 17 1 6.8692 -3.1617 -3.2434 18 1 4.5273 -2.7401 -3.7120 19 6 5.7565 1.0292 0.3997 20 8 5.4236 2.3609 -0.0270 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2122 2.3243 -0.0005 25 1 1.3403 4.5110 0.0113 26 1 3.7907 4.6410 0.0078 27 1 7.0060 -2.4967 -0.7328 28 1 5.9077 0.9965 1.4786 29 1 6.6386 0.6639 -0.1262 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260059590.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:59 Heat of formation + Delta-G solvation = -64.339365 kcal Electronic energy + Delta-G solvation = -14868.335087 eV Core-core repulsion = 12335.503168 eV Total energy + Delta-G solvation = -2532.831919 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.93930 -39.98157 -37.26044 -35.38917 -32.80929 -30.46984 -29.96460 -27.93321 -27.00063 -23.88944 -22.74947 -22.11813 -19.18771 -18.33346 -17.74068 -17.05025 -16.85856 -16.55668 -16.17798 -16.00494 -15.44565 -14.44383 -13.96986 -13.85875 -13.44050 -13.32798 -12.90315 -12.79786 -12.41656 -12.34042 -12.26139 -12.14045 -11.72679 -11.37559 -11.23476 -10.61878 -9.12836 -8.94785 -8.21045 -6.34977 0.49421 0.58045 1.37542 1.39851 1.48058 2.37431 2.52218 2.58739 2.90387 3.06316 3.93540 4.10849 4.29025 4.36197 4.37214 4.45447 4.48359 4.57118 4.65978 4.75062 4.86564 5.14279 5.32763 5.50033 5.51761 5.55330 5.68987 5.76098 6.13008 6.33809 6.64924 6.69103 7.32023 8.84956 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.011119 C = 0.008990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.685049 B = 2517.574205 C = 3113.932521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.151 3.849 4 C -0.237 4.237 5 C -0.049 4.049 6 C -0.186 4.186 7 C 0.112 3.888 8 C -0.217 4.217 9 C 0.067 3.933 10 H 0.019 0.981 11 C -0.518 4.518 12 H 0.042 0.958 13 C 0.017 3.983 14 N -0.918 5.918 15 Si 0.961 3.039 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.272 1.272 19 C 0.069 3.931 20 O -0.323 6.323 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.072 0.928 24 H 0.163 0.837 25 H 0.177 0.823 26 H 0.146 0.854 27 H 0.268 0.732 28 H 0.057 0.943 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 7.647 1.479 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.105 3.895 4 C -0.255 4.255 5 C -0.066 4.066 6 C -0.205 4.205 7 C 0.066 3.934 8 C -0.218 4.218 9 C 0.048 3.952 10 H 0.037 0.963 11 C -0.555 4.555 12 H 0.061 0.939 13 C -0.183 4.183 14 N -0.557 5.557 15 Si 0.786 3.214 16 H -0.197 1.197 17 H -0.199 1.199 18 H -0.197 1.197 19 C -0.006 4.006 20 O -0.237 6.237 21 H 0.085 0.915 22 H 0.128 0.872 23 H 0.091 0.909 24 H 0.181 0.819 25 H 0.194 0.806 26 H 0.164 0.836 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.294 7.458 1.471 12.796 hybrid contribution 0.368 -0.958 -0.645 1.212 sum -9.926 6.499 0.826 11.893 Atomic orbital electron populations 1.23341 0.76661 1.05135 1.02469 1.86181 1.23420 1.27465 1.88420 1.18501 0.89846 0.85540 0.95585 1.21427 1.00991 0.90992 1.12114 1.21013 0.92341 0.98337 0.94922 1.20491 0.93784 0.95455 1.10761 1.19874 0.83510 0.94501 0.95495 1.20692 0.93486 0.96720 1.10908 1.18679 0.87893 0.91761 0.96832 0.96328 1.21030 1.20105 1.20135 0.94269 0.93942 1.25757 0.95051 0.96365 1.01088 1.70013 1.23207 1.29751 1.32696 0.85561 0.78071 0.78210 0.79585 1.19695 1.19891 1.19680 1.23799 1.01103 0.78223 0.97455 1.86665 1.19222 1.35138 1.82724 0.91492 0.87238 0.90939 0.81940 0.80592 0.83643 0.92277 0.92492 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 15 2 O -0.34 -13.90 10.49 -92.36 -0.97 -14.87 15 3 C 0.15 6.25 6.67 22.42 0.15 6.40 15 4 C -0.24 -7.23 9.05 22.41 0.20 -7.03 15 5 C -0.05 -1.34 10.01 22.19 0.22 -1.12 15 6 C -0.19 -6.38 10.06 22.47 0.23 -6.15 15 7 C 0.11 5.05 7.03 22.67 0.16 5.21 15 8 C -0.22 -10.59 5.53 -19.44 -0.11 -10.70 15 9 C 0.07 3.74 2.94 -11.41 -0.03 3.71 15 10 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 11 C -0.52 -30.79 8.55 25.60 0.22 -30.57 15 12 H 0.04 2.58 7.78 -2.91 -0.02 2.56 15 13 C 0.02 0.96 5.16 84.65 0.44 1.39 15 14 N -0.92 -53.87 12.38 21.45 0.27 -53.61 15 15 Si 0.96 45.10 29.54 68.60 2.03 47.13 15 16 H -0.27 -12.50 7.11 99.48 0.71 -11.80 15 17 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 19 C 0.07 3.59 7.22 72.57 0.52 4.11 15 20 O -0.32 -15.96 11.10 -95.22 -1.06 -17.02 15 21 H 0.07 1.45 7.66 -2.39 -0.02 1.43 15 22 H 0.11 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.07 1.47 7.67 -2.39 -0.02 1.45 15 24 H 0.16 3.58 6.32 -2.91 -0.02 3.56 15 25 H 0.18 3.02 8.06 -2.91 -0.02 3.00 15 26 H 0.15 4.12 8.06 -2.91 -0.02 4.10 15 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 28 H 0.06 2.73 8.14 -2.39 -0.02 2.71 15 29 H 0.09 5.04 7.02 -2.39 -0.02 5.02 15 Total: -1.00 -69.89 252.15 4.53 -65.36 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.15 Total: 6.18 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 3.11 Total: -33.18 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.27 Total: -53.61 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -2.03 Total: -31.89 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.89 4.53 -65.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059590.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.019 kcal (2) G-P(sol) polarization free energy of solvation -69.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds