Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28923 * 125.96642 * 2 1 4 4 N 1.28725 * 111.64833 * 180.02562 * 3 2 1 5 5 C 1.34407 * 109.31529 * 0.02562 * 4 3 2 6 6 N 1.33515 * 135.66813 * 180.02562 * 5 4 3 7 7 C 1.31460 * 120.52666 * 179.97438 * 6 5 4 8 8 N 1.32115 * 122.59438 * 359.97438 * 7 6 5 9 9 C 1.33032 * 121.18710 * 0.02562 * 8 7 6 10 10 N 1.38315 * 120.78990 * 180.02562 * 9 8 7 11 11 C 1.36859 * 120.00094 * 359.72424 * 10 9 8 12 12 H 1.07998 * 120.00345 * 359.97438 * 11 10 9 13 13 C 1.38885 * 120.00188 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00271 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99519 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47828 * 89.99835 * 15 13 11 17 17 H 1.48501 * 109.46893 * 209.99682 * 15 13 11 18 18 H 1.48506 * 109.47372 * 329.99398 * 15 13 11 19 19 C 1.36861 * 125.97204 * 180.32906 * 2 1 3 20 20 H 1.08996 * 109.47185 * 89.97645 * 1 2 3 21 21 H 1.08997 * 109.46751 * 209.97280 * 1 2 3 22 22 H 1.09000 * 109.47070 * 329.96999 * 1 2 3 23 23 H 1.07992 * 118.70215 * 179.97438 * 7 6 5 24 24 H 0.97005 * 119.99761 * 179.97438 * 10 9 8 25 25 H 0.97000 * 120.00268 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0435 0.0000 4 7 3.4695 0.7251 -0.0005 5 6 3.5865 -0.6138 -0.0015 6 7 4.5992 -1.4840 -0.0019 7 6 4.3677 -2.7780 -0.0024 8 7 3.1466 -3.2825 -0.0020 9 6 2.0754 -2.4938 -0.0016 10 7 0.8007 -3.0308 -0.0006 11 6 0.6303 -4.3888 -0.0058 12 1 1.4910 -5.0411 -0.0111 13 6 -0.6496 -4.9280 -0.0043 14 7 -0.8134 -6.2329 -0.0098 15 14 -2.1383 -3.7998 0.0041 16 1 -2.5368 -3.4954 -1.3936 17 1 -3.2632 -4.4699 0.7047 18 1 -1.7986 -2.5371 0.7081 19 6 2.2689 -1.1076 -0.0064 20 1 -0.3633 0.0004 -1.0276 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3633 0.8897 0.5143 23 1 5.2087 -3.4554 -0.0032 24 1 0.0276 -2.4450 0.0001 25 1 -1.7073 -6.6095 -0.0091 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074951.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = 135.373067 kcal Electronic energy + Delta-G solvation = -14524.987966 eV Core-core repulsion = 11961.861387 eV Total energy + Delta-G solvation = -2563.126579 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.28292 -40.54324 -38.16421 -35.67899 -34.39805 -33.04915 -31.67042 -29.03161 -27.34615 -25.58777 -24.40926 -22.41409 -20.68329 -20.19860 -18.73869 -18.20401 -17.97984 -16.81612 -16.40564 -15.39614 -15.32041 -15.11990 -14.45570 -14.36878 -14.02873 -13.47426 -13.34153 -12.83089 -12.72195 -12.58242 -12.12315 -11.65237 -11.61270 -10.85274 -10.68263 -9.85585 -9.35418 -8.67663 -6.06145 -0.37005 0.24479 1.09838 1.13479 1.20423 1.31409 1.37626 2.01924 2.25742 2.72969 2.73709 3.16176 3.21714 3.43972 3.55638 4.02799 4.09621 4.27641 4.44413 4.66092 5.14358 5.36277 5.43838 5.83396 6.14882 6.37402 6.84293 6.91330 7.20687 7.67087 8.44475 Molecular weight = 220.08amu Principal moments of inertia in cm(-1) A = 0.034589 B = 0.011125 C = 0.008456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.318022 B = 2516.159177 C = 3310.327979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.272 5.272 3 N -0.022 5.022 4 N -0.300 5.300 5 C 0.255 3.745 6 N -0.594 5.594 7 C 0.366 3.634 8 N -0.610 5.610 9 C 0.409 3.591 10 N -0.515 5.515 11 C -0.305 4.305 12 H 0.100 0.900 13 C 0.001 3.999 14 N -0.885 5.885 15 Si 0.936 3.064 16 H -0.247 1.247 17 H -0.262 1.262 18 H -0.232 1.232 19 C -0.156 4.156 20 H 0.122 0.878 21 H 0.089 0.911 22 H 0.146 0.854 23 H 0.230 0.770 24 H 0.396 0.604 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 8.098 0.004 9.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.076 5.076 3 N -0.004 5.004 4 N -0.174 5.174 5 C 0.006 3.994 6 N -0.326 5.326 7 C 0.072 3.928 8 N -0.345 5.345 9 C 0.153 3.847 10 N -0.128 5.128 11 C -0.438 4.438 12 H 0.118 0.882 13 C -0.205 4.205 14 N -0.520 5.520 15 Si 0.755 3.245 16 H -0.171 1.171 17 H -0.187 1.187 18 H -0.155 1.155 19 C -0.288 4.288 20 H 0.140 0.860 21 H 0.108 0.892 22 H 0.164 0.836 23 H 0.246 0.754 24 H 0.236 0.764 25 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.617 8.750 0.009 9.894 hybrid contribution -1.614 -0.571 0.025 1.712 sum -6.231 8.179 0.034 10.283 Atomic orbital electron populations 1.22989 0.69967 1.07558 1.07573 1.47076 1.09740 1.02187 1.48617 1.77938 0.96143 1.12162 1.14123 1.75074 1.08211 1.10038 1.24086 1.20602 0.88060 0.91646 0.99137 1.67702 1.32386 1.02692 1.29836 1.25162 0.93224 0.88390 0.86057 1.68200 0.98500 1.37152 1.30660 1.17342 0.87765 0.83130 0.96453 1.41223 1.02881 1.07427 1.61268 1.19551 0.96168 0.80353 1.47680 0.88205 1.26086 1.01193 0.97829 0.95408 1.69754 1.25898 1.12295 1.44069 0.85793 0.78233 0.79593 0.80891 1.17072 1.18652 1.15517 1.20776 0.95243 0.90937 1.21894 0.85959 0.89243 0.83565 0.75445 0.76413 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 10.84 127.77 1.39 2.56 15 2 N -0.27 -8.96 3.79 -360.69 -1.37 -10.33 15 3 N -0.02 -0.78 13.09 37.02 0.48 -0.30 15 4 N -0.30 -12.67 12.41 -56.58 -0.70 -13.38 15 5 C 0.26 11.20 8.56 134.62 1.15 12.35 15 6 N -0.59 -25.46 10.49 -199.47 -2.09 -27.55 15 7 C 0.37 14.36 12.24 180.89 2.21 16.57 15 8 N -0.61 -27.13 9.25 -197.47 -1.83 -28.96 15 9 C 0.41 17.72 7.48 133.31 1.00 18.72 15 10 N -0.51 -21.45 5.21 -188.64 -0.98 -22.43 15 11 C -0.31 -14.88 10.20 84.06 0.86 -14.03 15 12 H 0.10 5.63 7.35 -2.91 -0.02 5.60 15 13 C 0.00 0.04 5.50 84.90 0.47 0.50 15 14 N -0.89 -44.91 13.96 21.66 0.30 -44.61 15 15 Si 0.94 30.99 27.73 68.60 1.90 32.89 15 16 H -0.25 -7.70 7.11 99.48 0.71 -6.99 15 17 H -0.26 -8.68 7.11 99.48 0.71 -7.98 15 18 H -0.23 -6.14 5.87 99.48 0.58 -5.56 15 19 C -0.16 -6.31 6.98 39.38 0.27 -6.03 15 20 H 0.12 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.09 1.85 5.22 -2.39 -0.01 1.84 15 22 H 0.15 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.23 6.76 8.06 -2.91 -0.02 6.73 15 24 H 0.40 13.73 2.82 -92.70 -0.26 13.47 15 25 H 0.29 13.37 8.31 -92.71 -0.77 12.60 15 Total: -1.00 -64.51 225.87 3.94 -60.57 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.87 Total: 23.43 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 7.35 Total: 30.65 kcal Atomic # 7 Polarization: -141.36 SS G_CDS: -6.19 Total: -147.54 kcal Atomic # 14 Polarization: 30.99 SS G_CDS: 1.90 Total: 32.89 kcal Total: -64.51 3.94 -60.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074951.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.946 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds