Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 N 1.46898 * 109.47515 * 300.28298 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.38441 * 120.58430 * 99.72339 * 12 9 7 14 14 N 1.31863 * 120.81195 * 179.80493 * 13 12 9 15 15 C 1.32065 * 121.88838 * 0.45860 * 14 13 12 16 16 C 1.37755 * 120.46772 * 359.78180 * 15 14 13 17 17 C 1.38041 * 120.58482 * 280.00233 * 12 9 7 18 18 C 1.50770 * 133.85792 * 359.95840 * 17 12 9 19 19 O 1.44011 * 105.95092 * 197.55127 * 18 17 12 20 20 C 1.43995 * 105.02950 * 331.77506 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99361 * 299.99455 * 11 9 7 23 23 H 1.00897 * 111.00235 * 63.94995 * 11 9 7 24 24 H 1.08000 * 119.59163 * 359.97438 * 13 12 9 25 25 H 1.07998 * 119.76807 * 179.80651 * 15 14 13 26 26 H 1.09000 * 110.15244 * 316.66752 * 18 17 12 27 27 H 1.08997 * 110.15765 * 78.35587 * 18 17 12 28 28 H 1.08995 * 110.14768 * 147.37579 * 20 19 18 29 29 H 1.08995 * 110.14625 * 269.04847 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 7 0.4066 -2.5716 1.2051 12 6 2.2305 -3.6445 0.0104 13 6 2.5354 -4.3054 1.1880 14 7 3.3888 -5.3107 1.1969 15 6 3.9922 -5.7233 0.0970 16 6 3.7406 -5.1092 -1.1101 17 6 2.8437 -4.0494 -1.1582 18 6 2.7719 -3.5850 -2.5908 19 8 3.3144 -4.6587 -3.3825 20 6 4.2480 -5.3280 -2.5144 21 1 -0.4850 0.8400 0.0004 22 1 0.9647 -2.5165 2.0439 23 1 -0.3007 -1.8522 1.1935 24 1 2.0665 -3.9956 2.1103 25 1 4.6876 -6.5482 0.1442 26 1 1.7361 -3.3966 -2.8730 27 1 3.3671 -2.6816 -2.7231 28 1 4.2748 -6.3936 -2.7420 29 1 5.2420 -4.8953 -2.6271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260166196.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = -6.126409 kcal Electronic energy + Delta-G solvation = -14769.890607 eV Core-core repulsion = 12271.875743 eV Total energy + Delta-G solvation = -2498.014865 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.62745 -37.78996 -35.17694 -32.13225 -31.69002 -30.03041 -27.62945 -26.28934 -24.90432 -22.79098 -21.70454 -19.83626 -16.83349 -16.73231 -16.35666 -15.75107 -15.15457 -14.84764 -14.26937 -13.76662 -13.30875 -12.88842 -12.80944 -12.63768 -12.17371 -11.73802 -11.40909 -11.28215 -11.02138 -10.80536 -10.21376 -10.15995 -9.96575 -9.01956 -8.81041 -8.60980 -8.22627 -7.37875 -6.23689 -4.41415 1.57543 1.80833 3.13043 3.22704 3.26716 4.16493 4.19439 4.33095 4.60107 4.86956 4.98481 5.04834 5.34747 5.50938 5.62165 5.80196 5.88049 6.02227 6.14550 6.32072 6.41723 6.50535 6.65095 6.97824 7.23365 7.44866 7.59915 7.89832 8.42174 8.52660 8.75872 8.95242 9.31501 10.74367 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.030606 B = 0.009862 C = 0.008570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.625323 B = 2838.405061 C = 3266.335882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.244 3.756 10 H 0.053 0.947 11 N -0.851 5.851 12 C -0.050 4.050 13 C 0.107 3.893 14 N -0.485 5.485 15 C 0.092 3.908 16 C -0.196 4.196 17 C -0.090 4.090 18 C 0.096 3.904 19 O -0.368 6.368 20 C 0.101 3.899 21 H 0.267 0.733 22 H 0.313 0.687 23 H 0.359 0.641 24 H 0.161 0.839 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 -6.266 -2.121 8.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.133 3.867 10 H 0.071 0.929 11 N -0.382 5.382 12 C -0.053 4.053 13 C -0.051 4.051 14 N -0.193 5.193 15 C -0.064 4.064 16 C -0.198 4.198 17 C -0.098 4.098 18 C 0.020 3.980 19 O -0.287 6.287 20 C 0.024 3.976 21 H 0.077 0.923 22 H 0.123 0.877 23 H 0.176 0.824 24 H 0.178 0.822 25 H 0.164 0.836 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.372 -7.352 -1.839 9.290 hybrid contribution 0.728 2.494 -0.359 2.623 sum 6.101 -4.858 -2.198 8.103 Atomic orbital electron populations 1.69732 1.05858 1.27423 1.49832 1.25002 0.94955 0.99384 0.94043 0.86437 0.80103 0.83059 0.77865 1.19742 1.20682 1.20764 1.21739 0.93568 0.90664 1.52697 0.92600 1.17930 0.88816 0.87767 0.92161 0.92913 1.59541 1.18435 1.56349 1.03881 1.20879 0.96468 0.96720 0.91214 1.22690 0.93342 0.90865 0.98242 1.67739 1.08200 1.13768 1.29631 1.21686 0.98960 0.99155 0.86616 1.21938 1.00850 0.99742 0.97301 1.20972 0.96787 0.95603 0.96446 1.21669 1.00845 0.89925 0.85588 1.89048 1.58727 1.45628 1.35282 1.21548 0.92797 0.98349 0.84890 0.92261 0.87747 0.82371 0.82154 0.83614 0.87997 0.89792 0.88996 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 11.53 55.43 0.64 -22.73 15 2 C 0.07 1.78 5.38 -17.82 -0.10 1.68 15 3 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.55 -13.94 8.71 -34.44 -0.30 -14.24 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 15 9 C 0.24 5.77 2.89 -70.02 -0.20 5.57 15 10 H 0.05 1.37 8.14 -51.93 -0.42 0.95 15 11 N -0.85 -19.22 8.69 -6.65 -0.06 -19.28 15 12 C -0.05 -1.07 5.03 -104.62 -0.53 -1.60 15 13 C 0.11 2.14 10.44 -17.46 -0.18 1.96 15 14 N -0.49 -9.21 10.36 -13.27 -0.14 -9.35 15 15 C 0.09 1.53 11.19 -17.63 -0.20 1.34 15 16 C -0.20 -3.36 6.37 -104.44 -0.67 -4.03 15 17 C -0.09 -1.76 6.17 -104.41 -0.64 -2.40 15 18 C 0.10 1.72 7.51 36.04 0.27 1.99 15 19 O -0.37 -6.24 11.72 -35.23 -0.41 -6.65 15 20 C 0.10 1.46 7.63 36.11 0.28 1.73 15 21 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 22 H 0.31 6.64 7.32 -39.29 -0.29 6.35 15 23 H 0.36 8.70 7.07 -39.29 -0.28 8.43 15 24 H 0.16 3.05 6.29 -52.49 -0.33 2.72 15 25 H 0.15 1.90 8.06 -52.49 -0.42 1.47 15 26 H 0.10 1.83 8.14 -51.93 -0.42 1.41 15 27 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 LS Contribution 249.95 15.07 3.77 3.77 Total: -1.00 -27.23 249.95 -6.46 -33.69 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -2.97 Total: 13.40 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.27 Total: -8.00 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.44 Total: -51.36 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.41 Total: -6.65 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.23 -6.46 -33.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260166196.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.563 kcal (2) G-P(sol) polarization free energy of solvation -27.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds