Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47218 * 240.00379 * 3 2 1 5 5 H 1.48505 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47303 * 120.00265 * 3 2 1 7 7 C 1.37879 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00292 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47228 * 300.00629 * 9 7 2 11 11 N 1.46907 * 109.46782 * 60.00065 * 9 7 2 12 12 C 1.50696 * 109.47245 * 180.02562 * 9 7 2 13 13 C 1.38445 * 120.58358 * 265.00040 * 12 9 7 14 14 N 1.31868 * 120.80951 * 179.72809 * 13 12 9 15 15 C 1.32062 * 121.88709 * 0.02562 * 14 13 12 16 16 C 1.37762 * 120.47380 * 359.97438 * 15 14 13 17 17 C 1.38042 * 120.58436 * 84.72188 * 12 9 7 18 18 C 1.50767 * 133.85550 * 0.29522 * 17 12 9 19 19 O 1.44014 * 105.95533 * 162.46021 * 18 17 12 20 20 C 1.43994 * 105.02645 * 28.21055 * 19 18 17 21 21 H 0.97004 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.00897 * 110.99719 * 296.04721 * 11 9 7 23 23 H 1.00896 * 110.99635 * 60.00262 * 11 9 7 24 24 H 1.08005 * 119.59240 * 359.74874 * 13 12 9 25 25 H 1.08003 * 119.76054 * 179.97438 * 15 14 13 26 26 H 1.08996 * 110.15886 * 43.32977 * 18 17 12 27 27 H 1.09004 * 110.21389 * 281.61077 * 18 17 12 28 28 H 1.09001 * 110.14379 * 212.62501 * 20 19 18 29 29 H 1.08995 * 110.20409 * 90.92750 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4059 -2.5766 -1.1997 12 6 2.2302 -3.6446 -0.0005 13 6 2.6090 -4.2475 -1.1879 14 7 3.4696 -5.2466 -1.1935 15 6 4.0037 -5.7136 -0.0796 16 6 3.6728 -5.1620 1.1386 17 6 2.7697 -4.1074 1.1828 18 6 2.6042 -3.7168 2.6296 19 8 3.1009 -4.8283 3.3990 20 6 4.0914 -5.4506 2.5593 21 1 -0.4850 0.8401 0.0004 22 1 -0.3013 -1.8571 -1.1908 23 1 0.9637 -2.5251 -2.0390 24 1 2.1948 -3.8950 -2.1209 25 1 4.7049 -6.5338 -0.1242 26 1 1.5516 -3.5450 2.8542 27 1 3.1852 -2.8204 2.8465 28 1 4.1092 -6.5264 2.7340 29 1 5.0743 -5.0225 2.7559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260166200.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = -25.961933 kcal Electronic energy + Delta-G solvation = -14759.881010 eV Core-core repulsion = 12261.006013 eV Total energy + Delta-G solvation = -2498.874997 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03877 -39.18117 -36.95539 -33.92004 -33.16625 -31.61627 -29.02588 -28.15661 -26.37561 -24.42843 -23.16886 -21.40532 -18.68698 -18.27582 -17.72875 -17.16294 -16.81558 -16.35606 -15.95956 -15.19888 -14.95677 -14.51591 -14.37065 -14.12939 -13.46039 -13.33857 -13.10265 -13.06092 -12.81482 -12.47056 -12.06972 -11.86223 -11.36421 -10.82952 -10.43862 -10.09144 -9.70685 -9.26693 -8.17751 -6.43670 0.12771 0.31994 1.36862 1.38768 1.46094 2.33065 2.83125 2.88621 3.00897 3.24593 3.49970 3.68982 3.93968 4.22897 4.36334 4.38639 4.52961 4.60917 4.72440 4.74714 4.85118 5.02310 5.11770 5.52949 5.58262 5.67241 5.77409 5.97970 6.55518 6.82777 6.99553 7.06895 7.33001 8.77329 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.030909 B = 0.009701 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.665316 B = 2885.498508 C = 3270.041000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.560 4.560 8 H 0.044 0.956 9 C 0.252 3.748 10 H 0.020 0.980 11 N -0.844 5.844 12 C -0.076 4.076 13 C 0.097 3.903 14 N -0.494 5.494 15 C 0.099 3.901 16 C -0.189 4.189 17 C -0.113 4.113 18 C 0.100 3.900 19 O -0.375 6.375 20 C 0.100 3.900 21 H 0.270 0.730 22 H 0.349 0.651 23 H 0.320 0.680 24 H 0.160 0.840 25 H 0.192 0.808 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 -7.374 2.599 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.599 4.599 8 H 0.062 0.938 9 C 0.141 3.859 10 H 0.038 0.962 11 N -0.374 5.374 12 C -0.079 4.079 13 C -0.060 4.060 14 N -0.202 5.202 15 C -0.057 4.057 16 C -0.191 4.191 17 C -0.121 4.121 18 C 0.023 3.977 19 O -0.294 6.294 20 C 0.024 3.976 21 H 0.079 0.921 22 H 0.165 0.835 23 H 0.131 0.869 24 H 0.177 0.823 25 H 0.209 0.791 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.145 0.855 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.987 -8.435 2.298 11.192 hybrid contribution 0.225 2.657 0.294 2.683 sum 7.212 -5.778 2.592 9.598 Atomic orbital electron populations 1.69810 1.06841 1.28287 1.50027 1.25660 0.95687 1.02094 0.93727 0.85638 0.78454 0.79020 0.78704 1.19906 1.20535 1.19943 1.21832 0.93057 0.91970 1.53060 0.93765 1.17663 0.88712 0.88433 0.91102 0.96225 1.59504 1.18181 1.55610 1.04068 1.20695 0.97630 0.96961 0.92598 1.22646 0.93548 0.91969 0.97864 1.67801 1.09353 1.11930 1.31107 1.22425 0.98546 0.99351 0.85411 1.22336 0.99497 0.98379 0.98862 1.21263 0.97756 0.96726 0.96394 1.21550 1.00978 0.89939 0.85193 1.89040 1.57073 1.44152 1.39108 1.21881 0.92303 1.00896 0.82555 0.92069 0.83546 0.86929 0.82259 0.79109 0.88983 0.89872 0.85477 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.61 11.54 21.45 0.25 -48.36 15 2 C 0.03 1.53 5.38 84.66 0.46 1.99 15 3 Si 0.96 41.51 29.54 68.60 2.03 43.54 15 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 7 C -0.56 -29.17 8.71 25.60 0.22 -28.94 15 8 H 0.04 2.35 7.74 -2.91 -0.02 2.33 15 9 C 0.25 12.31 2.89 43.42 0.13 12.43 15 10 H 0.02 1.08 8.02 -2.39 -0.02 1.06 15 11 N -0.84 -39.26 8.80 -174.95 -1.54 -40.80 15 12 C -0.08 -3.29 5.00 -19.86 -0.10 -3.39 15 13 C 0.10 3.88 10.46 84.74 0.89 4.76 15 14 N -0.49 -17.84 10.36 -195.86 -2.03 -19.87 15 15 C 0.10 2.97 11.19 84.55 0.95 3.92 15 16 C -0.19 -5.94 6.37 -19.75 -0.13 -6.07 15 17 C -0.11 -4.37 6.16 -19.73 -0.12 -4.49 15 18 C 0.10 3.55 7.47 71.26 0.53 4.09 15 19 O -0.37 -11.86 11.72 -148.98 -1.75 -13.61 15 20 C 0.10 2.48 7.63 71.30 0.54 3.02 15 21 H 0.27 13.76 8.31 -92.71 -0.77 12.99 15 22 H 0.35 17.43 7.08 -89.70 -0.63 16.79 15 23 H 0.32 13.93 7.25 -89.70 -0.65 13.28 15 24 H 0.16 6.13 6.33 -2.91 -0.02 6.11 15 25 H 0.19 3.95 8.06 -2.91 -0.02 3.93 15 26 H 0.09 3.40 8.09 -2.39 -0.02 3.38 15 27 H 0.08 2.93 8.14 -2.39 -0.02 2.91 15 28 H 0.13 2.33 8.14 -2.39 -0.02 2.31 15 29 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 Total: -1.00 -58.21 249.82 0.23 -57.98 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.10 Total: 33.81 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 3.37 Total: -12.68 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.32 Total: -109.03 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.75 Total: -13.61 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -58.21 0.23 -57.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260166200.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.019 kcal (2) G-P(sol) polarization free energy of solvation -58.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds