Wall clock time and date at job start Mon Mar 30 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46896 * 109.47239 * 59.99971 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38487 * 119.74211 * 124.72942 * 12 9 7 14 14 C 1.37827 * 118.90587 * 179.71553 * 13 12 9 15 15 C 1.39162 * 119.51755 * 0.18434 * 14 13 12 16 16 C 1.39118 * 118.06539 * 0.25909 * 15 14 13 17 17 N 1.31737 * 120.77097 * 359.63521 * 16 15 14 18 18 O 1.35964 * 111.14003 * 180.72326 * 15 14 13 19 19 C 1.43832 * 109.24397 * 340.83373 * 18 15 14 20 20 C 1.51330 * 133.32170 * 179.31076 * 14 13 12 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.00900 * 111.00550 * 59.99964 * 11 9 7 23 23 H 1.00896 * 111.00310 * 183.95550 * 11 9 7 24 24 H 1.08001 * 120.54564 * 359.97414 * 13 12 9 25 25 H 1.08006 * 119.62149 * 179.61602 * 16 15 14 26 26 H 1.09004 * 110.74150 * 269.34262 * 19 18 15 27 27 H 1.09000 * 110.89343 * 146.08030 * 19 18 15 28 28 H 1.09000 * 110.93695 * 313.99587 * 20 14 13 29 29 H 1.08994 * 110.93895 * 77.64612 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.1560 -4.6120 0.9888 14 6 3.0564 -5.6553 0.9688 15 6 4.0179 -5.7120 -0.0357 16 6 4.0321 -4.6963 -0.9863 17 7 3.1544 -3.7152 -0.9373 18 8 4.8026 -6.8142 0.0984 19 6 4.6940 -7.3128 1.4431 20 6 3.2785 -6.8524 1.8675 21 1 -0.4850 0.8401 0.0004 22 1 0.9651 -2.5260 -2.0381 23 1 -0.1572 -3.4138 -1.1907 24 1 1.4022 -4.5521 1.7599 25 1 4.7714 -4.7122 -1.7734 26 1 5.4537 -6.8645 2.0836 27 1 4.7679 -8.4001 1.4618 28 1 3.2625 -6.5597 2.9173 29 1 2.5402 -7.6296 1.6705 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260168298.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:19 Heat of formation + Delta-G solvation = -15.096815 kcal Electronic energy + Delta-G solvation = -14468.298657 eV Core-core repulsion = 11969.894807 eV Total energy + Delta-G solvation = -2498.403851 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.30753 -39.67393 -36.14532 -34.15575 -33.50059 -30.99512 -30.76957 -27.96965 -25.05267 -24.76976 -23.29815 -21.69692 -18.76038 -18.35893 -17.72908 -17.32564 -16.86139 -16.41584 -15.78795 -15.32177 -14.96061 -14.79766 -14.15104 -14.06624 -13.61843 -13.27258 -13.00913 -12.73365 -12.60181 -12.49053 -12.20743 -11.80658 -11.19995 -10.58049 -10.45716 -10.40308 -9.30104 -8.86663 -7.96369 -6.14360 0.18879 0.26614 1.43496 1.45403 1.54383 2.23986 2.48666 2.82712 3.26394 3.36128 3.53616 3.61741 3.85606 4.13366 4.31061 4.37264 4.47834 4.57785 4.72763 4.80010 4.92099 4.95256 5.12374 5.38919 5.42190 5.79778 6.05578 6.17065 6.64146 7.06698 7.14875 7.30509 7.55582 9.07871 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.047784 B = 0.007225 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.833511 B = 3874.449979 C = 4007.015613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.948 3.052 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.040 0.960 9 C 0.274 3.726 10 H 0.030 0.970 11 N -0.811 5.811 12 C 0.081 3.919 13 C -0.134 4.134 14 C -0.138 4.138 15 C 0.027 3.973 16 C 0.070 3.930 17 N -0.463 5.463 18 O -0.313 6.313 19 C 0.046 3.954 20 C -0.104 4.104 21 H 0.256 0.744 22 H 0.325 0.675 23 H 0.309 0.691 24 H 0.143 0.857 25 H 0.171 0.829 26 H 0.087 0.913 27 H 0.141 0.859 28 H 0.114 0.886 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 -14.868 4.311 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.774 3.226 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.058 0.942 9 C 0.164 3.836 10 H 0.048 0.952 11 N -0.336 5.336 12 C -0.059 4.059 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.020 4.020 16 C -0.088 4.088 17 N -0.173 5.173 18 O -0.227 6.227 19 C -0.028 4.028 20 C -0.141 4.141 21 H 0.065 0.935 22 H 0.136 0.864 23 H 0.120 0.880 24 H 0.161 0.839 25 H 0.188 0.812 26 H 0.105 0.895 27 H 0.159 0.841 28 H 0.133 0.867 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.701 -13.549 3.809 15.588 hybrid contribution 0.722 -0.371 0.392 0.902 sum 7.423 -13.920 4.201 16.326 Atomic orbital electron populations 1.70204 1.06785 1.26353 1.48305 1.25618 0.95472 1.01570 0.94159 0.85757 0.78690 0.80224 0.77963 1.20592 1.20539 1.19981 1.21022 0.91815 0.91016 1.53200 0.94207 1.17843 0.86694 0.88535 0.90541 0.95177 1.59115 1.27922 1.42332 1.04276 1.23022 0.95358 0.97045 0.90460 1.21434 1.00301 0.93589 1.00089 1.21492 0.95945 0.97982 0.99220 1.20720 0.92969 0.89987 0.98365 1.22428 0.99082 0.88100 0.99196 1.67453 1.03142 1.21639 1.25027 1.86763 1.64528 1.38253 1.33147 1.24222 0.96235 1.02454 0.79888 1.21928 0.98299 0.93598 1.00293 0.93515 0.86362 0.88037 0.83876 0.81224 0.89481 0.84120 0.86749 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.23 12.77 21.45 0.27 -51.96 15 2 C 0.04 2.01 5.39 84.66 0.46 2.46 15 3 Si 0.95 45.36 29.54 68.60 2.03 47.38 15 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 15 6 H -0.27 -12.95 7.11 99.48 0.71 -12.24 15 7 C -0.53 -30.51 8.53 25.60 0.22 -30.29 15 8 H 0.04 2.36 7.68 -2.91 -0.02 2.33 15 9 C 0.27 14.11 2.94 43.43 0.13 14.24 15 10 H 0.03 1.65 7.89 -2.39 -0.02 1.64 15 11 N -0.81 -40.13 8.53 -174.95 -1.49 -41.62 15 12 C 0.08 3.60 5.69 42.61 0.24 3.85 15 13 C -0.13 -4.89 9.71 22.23 0.22 -4.68 15 14 C -0.14 -4.21 6.34 -19.54 -0.12 -4.34 15 15 C 0.03 0.89 7.09 22.70 0.16 1.05 15 16 C 0.07 2.56 11.22 84.92 0.95 3.51 15 17 N -0.46 -20.24 9.88 -183.04 -1.81 -22.05 15 18 O -0.31 -8.43 11.10 -93.14 -1.03 -9.46 15 19 C 0.05 0.78 8.01 72.59 0.58 1.36 15 20 C -0.10 -1.97 7.11 30.65 0.22 -1.76 15 21 H 0.26 14.47 8.31 -92.71 -0.77 13.70 15 22 H 0.32 16.12 8.93 -89.69 -0.80 15.32 15 23 H 0.31 13.51 9.06 -89.70 -0.81 12.70 15 24 H 0.14 4.73 7.96 -2.91 -0.02 4.71 15 25 H 0.17 5.24 8.06 -2.91 -0.02 5.22 15 26 H 0.09 1.29 8.14 -2.38 -0.02 1.27 15 27 H 0.14 1.38 8.14 -2.39 -0.02 1.36 15 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 15 29 H 0.11 1.72 8.14 -2.39 -0.02 1.70 15 Total: -1.00 -68.28 255.60 0.59 -67.69 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.43 Total: 24.60 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 3.05 Total: -14.59 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -3.03 Total: -115.62 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.03 Total: -9.46 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.28 0.59 -67.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260168298.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.591 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds