Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00112 * 2 1 4 4 H 1.48505 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47209 * 299.99540 * 3 2 1 6 6 H 1.48500 * 109.47456 * 59.99754 * 3 2 1 7 7 C 1.37874 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00344 * 184.96966 * 7 2 1 9 9 C 1.50701 * 120.00301 * 4.96347 * 7 2 1 10 10 H 1.09002 * 109.47449 * 174.68611 * 9 7 2 11 11 C 1.52999 * 109.46795 * 54.68364 * 9 7 2 12 12 N 1.46494 * 109.47200 * 65.00306 * 11 9 7 13 13 C 1.34782 * 120.00004 * 179.72613 * 12 11 9 14 14 O 1.21280 * 119.99960 * 0.26689 * 13 12 11 15 15 C 1.50701 * 109.47022 * 294.68544 * 9 7 2 16 16 C 1.38667 * 120.42098 * 91.28330 * 15 9 7 17 17 C 1.38629 * 118.42512 * 180.02562 * 16 15 9 18 18 C 1.38226 * 119.15752 * 359.97438 * 17 16 15 19 19 N 1.31848 * 120.76507 * 0.02562 * 18 17 16 20 20 C 1.31885 * 121.72706 * 359.69871 * 19 18 17 21 21 H 0.97004 * 119.99842 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47293 * 305.00151 * 11 9 7 23 23 H 1.09001 * 109.47228 * 185.00101 * 11 9 7 24 24 H 0.97005 * 119.99796 * 359.97438 * 12 11 9 25 25 H 1.08001 * 119.99686 * 180.27304 * 13 12 11 26 26 H 1.08010 * 120.78949 * 359.97438 * 16 15 9 27 27 H 1.07997 * 120.42167 * 180.02562 * 17 16 15 28 28 H 1.07998 * 119.61262 * 179.97438 * 18 17 16 29 29 H 1.08002 * 119.62365 * 180.31127 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0814 -1.1959 0.0816 9 6 1.2552 -2.4968 -0.1118 10 1 1.9662 -3.3194 -0.1892 11 6 0.3691 -2.4695 -1.3587 12 7 1.2116 -2.4026 -2.5552 13 6 0.6449 -2.3742 -3.7778 14 8 -0.5627 -2.3990 -3.8872 15 6 0.3958 -2.6890 1.1111 16 6 -0.9148 -2.2365 1.1265 17 6 -1.6680 -2.4347 2.2733 18 6 -1.0917 -3.0727 3.3556 19 7 0.1581 -3.4899 3.3055 20 6 0.9023 -3.3233 2.2295 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2815 -1.5956 -1.3232 23 1 -0.2387 -3.3737 -1.3925 24 1 2.1775 -2.3824 -2.4677 25 1 1.2663 -2.3293 -4.6600 26 1 -1.3387 -1.7406 0.2656 27 1 -2.6923 -2.0956 2.3203 28 1 -1.6716 -3.2306 4.2529 29 1 1.9206 -3.6830 2.2238 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260242049.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = -5.979833 kcal Electronic energy + Delta-G solvation = -14788.509199 eV Core-core repulsion = 12290.500691 eV Total energy + Delta-G solvation = -2498.008509 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.24786 -38.32574 -35.45622 -32.82505 -31.40003 -30.83971 -28.03230 -25.42131 -23.07917 -22.38682 -20.72047 -20.09358 -17.16333 -16.39977 -16.11684 -15.50089 -14.86132 -14.55464 -14.05567 -13.87964 -13.17340 -12.85323 -12.60299 -12.26297 -11.83751 -11.69266 -11.11277 -11.05522 -10.73365 -10.68300 -9.82632 -9.46531 -9.23801 -8.89615 -8.59110 -8.42653 -8.04331 -7.79362 -6.21268 -4.39674 2.15859 2.46667 3.14929 3.25032 3.25866 3.44690 4.21288 4.25167 4.86747 5.02960 5.33462 5.66182 5.75879 6.03894 6.16590 6.24928 6.34142 6.54150 6.75163 6.77864 6.89954 7.21855 7.37300 7.45812 7.62308 7.78292 7.80178 8.02108 8.34270 8.61829 8.90905 8.97676 9.29568 10.72279 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.013161 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.887124 B = 2126.973686 C = 2959.479866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.071 3.929 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.067 3.933 10 H 0.038 0.962 11 C 0.110 3.890 12 N -0.707 5.707 13 C 0.479 3.521 14 O -0.577 6.577 15 C -0.073 4.073 16 C -0.032 4.032 17 C -0.191 4.191 18 C 0.057 3.943 19 N -0.503 5.503 20 C 0.075 3.925 21 H 0.265 0.735 22 H 0.110 0.890 23 H 0.028 0.972 24 H 0.398 0.602 25 H 0.112 0.888 26 H 0.150 0.850 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -3.065 -1.205 3.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.047 3.953 10 H 0.057 0.943 11 C -0.013 4.013 12 N -0.358 5.358 13 C 0.246 3.754 14 O -0.456 6.456 15 C -0.076 4.076 16 C -0.058 4.058 17 C -0.211 4.211 18 C -0.100 4.100 19 N -0.213 5.213 20 C -0.081 4.081 21 H 0.076 0.924 22 H 0.127 0.873 23 H 0.046 0.954 24 H 0.232 0.768 25 H 0.128 0.872 26 H 0.168 0.832 27 H 0.133 0.867 28 H 0.152 0.848 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.015 -3.355 -0.547 3.548 hybrid contribution 0.566 1.652 -0.491 1.814 sum 1.581 -1.703 -1.038 2.545 Atomic orbital electron populations 1.69696 1.05973 1.26849 1.48452 1.24960 0.94858 0.99411 0.93985 0.86474 0.80112 0.83375 0.77741 1.19641 1.20824 1.21015 1.21040 0.93229 0.89482 1.51283 0.91818 1.18009 0.92531 0.96655 0.88070 0.94326 1.21740 0.94137 1.01634 0.83826 1.46443 1.10879 1.71553 1.06892 1.22314 0.89905 0.76670 0.86515 1.90648 1.16631 1.50739 1.87564 1.21135 0.94316 0.93841 0.98317 1.21825 0.93351 0.92231 0.98377 1.22036 1.00776 1.02554 0.95771 1.22285 0.91940 0.97979 0.97774 1.67476 1.06438 1.19838 1.27511 1.22359 0.98774 0.97981 0.89002 0.92406 0.87254 0.95393 0.76831 0.87228 0.83215 0.86698 0.84804 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.74 7.96 55.43 0.44 -21.30 15 2 C 0.07 1.73 5.12 -17.82 -0.09 1.64 15 3 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 15 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 7 C -0.51 -12.03 8.22 -34.44 -0.28 -12.32 15 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 15 9 C 0.07 1.45 2.36 -92.92 -0.22 1.23 15 10 H 0.04 0.77 8.10 -51.93 -0.42 0.35 15 11 C 0.11 2.37 4.00 -4.05 -0.02 2.35 15 12 N -0.71 -12.94 5.35 -64.68 -0.35 -13.29 15 13 C 0.48 8.51 12.64 54.06 0.68 9.20 15 14 O -0.58 -13.10 17.17 5.56 0.10 -13.00 15 15 C -0.07 -1.61 4.69 -104.48 -0.49 -2.10 15 16 C -0.03 -0.69 7.56 -39.28 -0.30 -0.99 15 17 C -0.19 -3.75 10.11 -39.44 -0.40 -4.14 15 18 C 0.06 1.10 11.18 -17.55 -0.20 0.91 15 19 N -0.50 -10.58 10.36 -13.25 -0.14 -10.72 15 20 C 0.08 1.59 10.87 -17.55 -0.19 1.40 15 21 H 0.27 6.52 8.31 -40.82 -0.34 6.18 15 22 H 0.11 2.70 4.74 -51.93 -0.25 2.45 15 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 24 H 0.40 6.32 8.34 -40.82 -0.34 5.98 15 25 H 0.11 1.38 8.06 -52.49 -0.42 0.95 15 26 H 0.15 3.47 5.30 -52.48 -0.28 3.19 15 27 H 0.11 1.94 8.06 -52.49 -0.42 1.51 15 28 H 0.13 2.13 8.06 -52.49 -0.42 1.70 15 29 H 0.14 2.64 8.06 -52.49 -0.42 2.22 15 LS Contribution 251.46 15.07 3.79 3.79 Total: -1.00 -28.66 251.46 -5.62 -34.29 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -2.94 Total: 8.44 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.50 Total: -2.83 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.04 Total: -45.30 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.10 Total: -13.00 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.66 -5.62 -34.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260242049.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.308 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds