Wall clock time and date at job start Mon Mar 30 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00112 * 2 1 4 4 H 1.48505 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47209 * 299.99540 * 3 2 1 6 6 H 1.48500 * 109.47456 * 59.99754 * 3 2 1 7 7 C 1.37874 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00344 * 184.96966 * 7 2 1 9 9 C 1.50701 * 120.00301 * 4.96347 * 7 2 1 10 10 H 1.09002 * 109.47449 * 174.68611 * 9 7 2 11 11 C 1.52999 * 109.46795 * 54.68364 * 9 7 2 12 12 N 1.46494 * 109.47200 * 65.00306 * 11 9 7 13 13 C 1.34782 * 120.00004 * 179.72613 * 12 11 9 14 14 O 1.21280 * 119.99960 * 0.26689 * 13 12 11 15 15 C 1.50701 * 109.47022 * 294.68544 * 9 7 2 16 16 C 1.38667 * 120.42098 * 91.28330 * 15 9 7 17 17 C 1.38629 * 118.42512 * 180.02562 * 16 15 9 18 18 C 1.38226 * 119.15752 * 359.97438 * 17 16 15 19 19 N 1.31848 * 120.76507 * 0.02562 * 18 17 16 20 20 C 1.31885 * 121.72706 * 359.69871 * 19 18 17 21 21 H 0.97004 * 119.99842 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47293 * 305.00151 * 11 9 7 23 23 H 1.09001 * 109.47228 * 185.00101 * 11 9 7 24 24 H 0.97005 * 119.99796 * 359.97438 * 12 11 9 25 25 H 1.08001 * 119.99686 * 180.27304 * 13 12 11 26 26 H 1.08010 * 120.78949 * 359.97438 * 16 15 9 27 27 H 1.07997 * 120.42167 * 180.02562 * 17 16 15 28 28 H 1.07998 * 119.61262 * 179.97438 * 18 17 16 29 29 H 1.08002 * 119.62365 * 180.31127 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0814 -1.1959 0.0816 9 6 1.2552 -2.4968 -0.1118 10 1 1.9662 -3.3194 -0.1892 11 6 0.3691 -2.4695 -1.3587 12 7 1.2116 -2.4026 -2.5552 13 6 0.6449 -2.3742 -3.7778 14 8 -0.5627 -2.3990 -3.8872 15 6 0.3958 -2.6890 1.1111 16 6 -0.9148 -2.2365 1.1265 17 6 -1.6680 -2.4347 2.2733 18 6 -1.0917 -3.0727 3.3556 19 7 0.1581 -3.4899 3.3055 20 6 0.9023 -3.3233 2.2295 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2815 -1.5956 -1.3232 23 1 -0.2387 -3.3737 -1.3925 24 1 2.1775 -2.3824 -2.4677 25 1 1.2663 -2.3293 -4.6600 26 1 -1.3387 -1.7406 0.2656 27 1 -2.6923 -2.0956 2.3203 28 1 -1.6716 -3.2306 4.2529 29 1 1.9206 -3.6830 2.2238 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260242049.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:02 Heat of formation + Delta-G solvation = -25.306873 kcal Electronic energy + Delta-G solvation = -14789.347283 eV Core-core repulsion = 12290.500691 eV Total energy + Delta-G solvation = -2498.846592 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85122 -39.87428 -37.13445 -34.47341 -33.11367 -32.44627 -29.68755 -27.17186 -24.73189 -23.97742 -22.24976 -21.75485 -18.72705 -18.05990 -17.71991 -17.16671 -16.57918 -16.13984 -15.69042 -15.44751 -14.84898 -14.40256 -14.24941 -13.83955 -13.54299 -13.42053 -12.87929 -12.81536 -12.42948 -12.32597 -11.56786 -11.18893 -10.82900 -10.65556 -10.22854 -10.05848 -9.66931 -9.43216 -8.02871 -6.25574 0.56813 0.82883 1.39597 1.46509 1.52450 2.01695 2.41441 2.85211 3.15696 3.29201 3.84376 4.26746 4.37730 4.46409 4.55206 4.63121 4.74957 4.85862 5.07828 5.18243 5.26770 5.54868 5.70319 5.80680 5.87636 6.08619 6.16253 6.25507 6.75245 6.95014 7.31471 7.44443 7.58000 8.87082 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.013161 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.887124 B = 2126.973686 C = 2959.479866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.034 3.966 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.296 1.296 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.069 3.931 10 H 0.053 0.947 11 C 0.122 3.878 12 N -0.704 5.704 13 C 0.478 3.522 14 O -0.629 6.629 15 C -0.092 4.092 16 C -0.048 4.048 17 C -0.192 4.192 18 C 0.059 3.941 19 N -0.515 5.515 20 C 0.066 3.934 21 H 0.259 0.741 22 H 0.078 0.922 23 H 0.016 0.984 24 H 0.411 0.589 25 H 0.179 0.821 26 H 0.131 0.869 27 H 0.141 0.859 28 H 0.172 0.828 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -3.336 -1.039 4.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.049 3.951 10 H 0.071 0.929 11 C -0.003 4.003 12 N -0.355 5.355 13 C 0.248 3.752 14 O -0.512 6.512 15 C -0.095 4.095 16 C -0.074 4.074 17 C -0.212 4.212 18 C -0.098 4.098 19 N -0.225 5.225 20 C -0.089 4.089 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.034 0.966 24 H 0.248 0.752 25 H 0.194 0.806 26 H 0.149 0.851 27 H 0.159 0.841 28 H 0.189 0.811 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.906 -3.636 -0.385 4.124 hybrid contribution 0.277 1.701 -0.524 1.801 sum 2.183 -1.936 -0.910 3.056 Atomic orbital electron populations 1.69863 1.06689 1.26581 1.49344 1.25485 0.95363 1.01497 0.94399 0.85743 0.79681 0.80826 0.76742 1.18742 1.21254 1.22294 1.21222 0.93316 0.90149 1.50496 0.91708 1.17993 0.92610 0.96411 0.88045 0.92902 1.21367 0.94149 0.99531 0.85259 1.46439 1.11379 1.71245 1.06426 1.23449 0.89622 0.74552 0.87550 1.90635 1.19377 1.52963 1.88176 1.21244 0.94666 0.94818 0.98800 1.21796 0.93929 0.92870 0.98812 1.22328 1.01887 1.02012 0.95007 1.22887 0.91589 0.96542 0.98794 1.67547 1.07261 1.20252 1.27414 1.22606 0.99597 0.97924 0.88816 0.93144 0.90364 0.96592 0.75234 0.80590 0.85107 0.84102 0.81107 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.68 7.96 21.45 0.17 -44.51 15 2 C 0.03 1.64 5.12 84.65 0.43 2.07 15 3 Si 0.94 39.97 29.54 68.60 2.03 42.00 15 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 5 H -0.29 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.30 -13.06 7.11 99.48 0.71 -12.35 15 7 C -0.51 -23.69 8.22 25.60 0.21 -23.48 15 8 H 0.06 2.92 7.82 -2.91 -0.02 2.90 15 9 C 0.07 2.94 2.36 -12.29 -0.03 2.92 15 10 H 0.05 2.05 8.10 -2.39 -0.02 2.03 15 11 C 0.12 5.26 4.00 86.38 0.35 5.61 15 12 N -0.70 -24.88 5.35 -476.93 -2.55 -27.43 15 13 C 0.48 16.14 12.64 129.79 1.64 17.78 15 14 O -0.63 -28.42 17.17 -3.03 -0.05 -28.48 15 15 C -0.09 -4.04 4.69 -19.77 -0.09 -4.13 15 16 C -0.05 -2.09 7.56 22.47 0.17 -1.92 15 17 C -0.19 -7.29 10.11 22.36 0.23 -7.06 15 18 C 0.06 2.13 11.18 84.69 0.95 3.08 15 19 N -0.52 -20.76 10.36 -195.84 -2.03 -22.79 15 20 C 0.07 2.73 10.87 84.67 0.92 3.65 15 21 H 0.26 12.93 8.31 -92.71 -0.77 12.16 15 22 H 0.08 3.96 4.74 -2.39 -0.01 3.95 15 23 H 0.02 0.71 8.14 -2.39 -0.02 0.69 15 24 H 0.41 12.23 8.34 -92.70 -0.77 11.46 15 25 H 0.18 3.66 8.06 -2.91 -0.02 3.64 15 26 H 0.13 6.25 5.30 -2.91 -0.02 6.23 15 27 H 0.14 4.48 8.06 -2.91 -0.02 4.46 15 28 H 0.17 4.82 8.06 -2.91 -0.02 4.79 15 29 H 0.15 5.65 8.06 -2.91 -0.02 5.63 15 Total: -1.00 -61.36 251.46 2.73 -58.63 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.40 Total: 24.07 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.77 Total: -1.49 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -4.41 Total: -94.73 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -61.36 2.73 -58.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260242049.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.321 kcal (2) G-P(sol) polarization free energy of solvation -61.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds