Wall clock time and date at job start Mon Mar 30 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99773 * 2 1 4 4 H 1.48503 * 109.47282 * 270.00045 * 3 2 1 5 5 H 1.48497 * 109.47296 * 29.99638 * 3 2 1 6 6 H 1.48500 * 109.47325 * 150.00060 * 3 2 1 7 7 C 1.37872 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00426 * 186.63318 * 7 2 1 9 9 C 1.50707 * 119.99813 * 6.64069 * 7 2 1 10 10 H 1.08993 * 109.47031 * 328.96261 * 9 7 2 11 11 C 1.53000 * 109.46663 * 208.96180 * 9 7 2 12 12 N 1.46899 * 109.47505 * 65.34027 * 11 9 7 13 13 C 1.50698 * 109.47098 * 88.96200 * 9 7 2 14 14 C 1.38629 * 120.75118 * 60.00302 * 13 9 7 15 15 C 1.38668 * 119.39228 * 179.97438 * 14 13 9 16 16 N 1.31449 * 120.92296 * 0.02562 * 15 14 13 17 17 C 1.32889 * 121.62875 * 359.97438 * 16 15 14 18 18 C 1.47547 * 119.74085 * 179.97438 * 17 16 15 19 19 O 1.21211 * 119.99940 * 179.97438 * 18 17 16 20 20 C 1.38569 * 120.75012 * 239.71555 * 13 9 7 21 21 H 0.96996 * 120.00516 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46647 * 185.33803 * 11 9 7 23 23 H 1.09002 * 109.47581 * 305.33294 * 11 9 7 24 24 H 1.00900 * 110.99860 * 56.03702 * 12 11 9 25 25 H 1.00893 * 111.00331 * 180.02562 * 12 11 9 26 26 H 1.08000 * 120.30506 * 359.94602 * 14 13 9 27 27 H 1.07998 * 119.53454 * 179.97438 * 15 14 13 28 28 H 1.07993 * 120.00201 * 0.02562 * 18 17 16 29 29 H 1.07999 * 120.47606 * 0.02725 * 20 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0791 -1.1971 0.1086 9 6 1.2586 -2.4948 -0.1498 10 1 0.2658 -2.3972 0.2891 11 6 2.0257 -3.6082 0.5664 12 7 2.0406 -3.3416 2.0109 13 6 1.1300 -2.8340 -1.6125 14 6 2.2566 -3.0120 -2.4005 15 6 2.1055 -3.3240 -3.7432 16 7 0.9110 -3.4523 -4.2767 17 6 -0.1945 -3.2901 -3.5573 18 6 -1.5143 -3.4433 -4.1990 19 8 -2.5257 -3.2968 -3.5472 20 6 -0.1169 -2.9808 -2.1988 21 1 -0.4851 0.8400 -0.0004 22 1 1.5376 -4.5646 0.3785 23 1 3.0491 -3.6429 0.1927 24 1 1.1030 -3.2407 2.3697 25 1 2.5422 -4.0632 2.5067 26 1 3.2428 -2.9082 -1.9728 27 1 2.9816 -3.4628 -4.3593 28 1 -1.5792 -3.6867 -5.2492 29 1 -1.0157 -2.8533 -1.6138 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260247486.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:15 Heat of formation + Delta-G solvation = -5.597098 kcal Electronic energy + Delta-G solvation = -14464.201055 eV Core-core repulsion = 11966.209144 eV Total energy + Delta-G solvation = -2497.991912 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.82359 -38.17425 -35.60613 -32.48192 -31.79930 -30.82604 -27.87172 -25.04929 -24.35345 -22.43923 -21.49282 -19.53694 -16.78692 -16.62728 -15.88832 -15.04218 -14.84712 -14.45295 -14.41586 -14.23060 -13.79518 -13.59048 -12.78651 -12.53901 -12.19383 -11.51080 -11.33588 -10.87740 -10.81464 -10.63399 -9.87970 -9.81606 -9.33206 -8.84439 -8.57333 -8.54875 -8.48448 -7.81061 -6.11717 -4.11833 1.07939 2.00368 2.81596 3.28092 3.35372 3.38389 4.34178 4.38798 4.52105 4.97297 5.16374 5.43534 5.52055 5.75028 5.84012 5.94683 6.05268 6.13567 6.27876 6.38475 6.64648 6.94409 7.03045 7.34682 7.55496 7.61949 7.82658 7.91290 8.18227 8.25250 8.41768 8.91578 9.49918 10.97407 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.010271 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.358758 B = 2725.489115 C = 3065.620861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.062 3.938 10 H 0.068 0.932 11 C 0.081 3.919 12 N -0.831 5.831 13 C 0.004 3.996 14 C -0.138 4.138 15 C 0.077 3.923 16 N -0.472 5.472 17 C 0.001 3.999 18 C 0.404 3.596 19 O -0.459 6.459 20 C -0.105 4.105 21 H 0.263 0.737 22 H -0.004 1.004 23 H 0.057 0.943 24 H 0.337 0.663 25 H 0.321 0.679 26 H 0.132 0.868 27 H 0.150 0.850 28 H 0.107 0.893 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -7.082 -4.132 8.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.079 0.921 9 C 0.043 3.957 10 H 0.086 0.914 11 C -0.049 4.049 12 N -0.359 5.359 13 C -0.005 4.005 14 C -0.158 4.158 15 C -0.083 4.083 16 N -0.185 5.185 17 C -0.133 4.133 18 C 0.261 3.739 19 O -0.329 6.329 20 C -0.125 4.125 21 H 0.072 0.928 22 H 0.014 0.986 23 H 0.076 0.924 24 H 0.149 0.851 25 H 0.132 0.868 26 H 0.150 0.850 27 H 0.167 0.833 28 H 0.124 0.876 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.069 -6.408 -4.843 8.295 hybrid contribution 0.212 0.449 0.827 0.965 sum 2.281 -5.959 -4.016 7.539 Atomic orbital electron populations 1.69905 1.05966 1.26978 1.49521 1.24999 0.94859 0.99430 0.94584 0.86575 0.80066 0.83334 0.77994 1.20826 1.21261 1.19649 1.20764 0.93441 0.88899 1.49085 0.92105 1.18101 0.99116 0.93487 0.84993 0.91434 1.21810 0.99622 0.95026 0.88488 1.58452 1.21930 1.51694 1.03847 1.21320 0.91112 0.87558 1.00538 1.22252 1.00408 0.98667 0.94430 1.22570 0.94368 0.98046 0.93284 1.67422 0.98386 1.13808 1.38872 1.21947 0.94809 1.03971 0.92611 1.23870 0.85683 0.70729 0.93648 1.90510 1.37693 1.36470 1.68209 1.22276 0.99496 0.96226 0.94529 0.92762 0.98582 0.92424 0.85058 0.86795 0.84970 0.83251 0.87635 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 12.85 55.43 0.71 -24.17 15 2 C 0.06 1.72 5.45 -17.82 -0.10 1.62 15 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.48 -12.40 7.70 -34.44 -0.27 -12.66 15 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 15 9 C 0.06 1.42 2.20 -92.92 -0.20 1.21 15 10 H 0.07 1.73 7.20 -51.93 -0.37 1.36 15 11 C 0.08 1.57 5.91 -3.82 -0.02 1.55 15 12 N -0.83 -15.18 9.35 -10.37 -0.10 -15.27 15 13 C 0.00 0.08 4.78 -104.36 -0.50 -0.42 15 14 C -0.14 -2.58 9.02 -39.28 -0.35 -2.93 15 15 C 0.08 1.30 11.18 -17.56 -0.20 1.11 15 16 N -0.47 -8.50 10.30 -9.88 -0.10 -8.60 15 17 C 0.00 0.02 6.74 -83.13 -0.56 -0.54 15 18 C 0.40 6.64 11.68 34.53 0.40 7.05 15 19 O -0.46 -8.89 17.14 5.62 0.10 -8.79 15 20 C -0.10 -2.22 9.29 -38.97 -0.36 -2.58 15 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 22 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 15 23 H 0.06 1.09 7.67 -51.93 -0.40 0.69 15 24 H 0.34 6.06 8.99 -39.29 -0.35 5.71 15 25 H 0.32 4.78 9.08 -39.30 -0.36 4.42 15 26 H 0.13 2.28 7.73 -52.49 -0.41 1.88 15 27 H 0.15 1.96 8.06 -52.49 -0.42 1.53 15 28 H 0.11 1.30 8.06 -52.49 -0.42 0.88 15 29 H 0.14 3.05 7.59 -52.49 -0.40 2.66 15 LS Contribution 263.10 15.07 3.96 3.96 Total: -1.00 -29.69 263.10 -5.70 -35.40 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.10 Total: 7.96 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.16 Total: -6.60 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.51 Total: -48.04 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.10 Total: -8.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.69 -5.70 -35.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247486.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.799 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds