Wall clock time and date at job start Mon Mar 30 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99773 * 2 1 4 4 H 1.48503 * 109.47282 * 270.00045 * 3 2 1 5 5 H 1.48497 * 109.47296 * 29.99638 * 3 2 1 6 6 H 1.48500 * 109.47325 * 150.00060 * 3 2 1 7 7 C 1.37872 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00426 * 186.63318 * 7 2 1 9 9 C 1.50707 * 119.99813 * 6.64069 * 7 2 1 10 10 H 1.08993 * 109.47031 * 328.96261 * 9 7 2 11 11 C 1.53000 * 109.46663 * 208.96180 * 9 7 2 12 12 N 1.46899 * 109.47505 * 65.34027 * 11 9 7 13 13 C 1.50698 * 109.47098 * 88.96200 * 9 7 2 14 14 C 1.38629 * 120.75118 * 60.00302 * 13 9 7 15 15 C 1.38668 * 119.39228 * 179.97438 * 14 13 9 16 16 N 1.31449 * 120.92296 * 0.02562 * 15 14 13 17 17 C 1.32889 * 121.62875 * 359.97438 * 16 15 14 18 18 C 1.47547 * 119.74085 * 179.97438 * 17 16 15 19 19 O 1.21211 * 119.99940 * 179.97438 * 18 17 16 20 20 C 1.38569 * 120.75012 * 239.71555 * 13 9 7 21 21 H 0.96996 * 120.00516 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46647 * 185.33803 * 11 9 7 23 23 H 1.09002 * 109.47581 * 305.33294 * 11 9 7 24 24 H 1.00900 * 110.99860 * 56.03702 * 12 11 9 25 25 H 1.00893 * 111.00331 * 180.02562 * 12 11 9 26 26 H 1.08000 * 120.30506 * 359.94602 * 14 13 9 27 27 H 1.07998 * 119.53454 * 179.97438 * 15 14 13 28 28 H 1.07993 * 120.00201 * 0.02562 * 18 17 16 29 29 H 1.07999 * 120.47606 * 0.02725 * 20 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0791 -1.1971 0.1086 9 6 1.2586 -2.4948 -0.1498 10 1 0.2658 -2.3972 0.2891 11 6 2.0257 -3.6082 0.5664 12 7 2.0406 -3.3416 2.0109 13 6 1.1300 -2.8340 -1.6125 14 6 2.2566 -3.0120 -2.4005 15 6 2.1055 -3.3240 -3.7432 16 7 0.9110 -3.4523 -4.2767 17 6 -0.1945 -3.2901 -3.5573 18 6 -1.5143 -3.4433 -4.1990 19 8 -2.5257 -3.2968 -3.5472 20 6 -0.1169 -2.9808 -2.1988 21 1 -0.4851 0.8400 -0.0004 22 1 1.5376 -4.5646 0.3785 23 1 3.0491 -3.6429 0.1927 24 1 1.1030 -3.2407 2.3697 25 1 2.5422 -4.0632 2.5067 26 1 3.2428 -2.9082 -1.9728 27 1 2.9816 -3.4628 -4.3593 28 1 -1.5792 -3.6867 -5.2492 29 1 -1.0157 -2.8533 -1.6138 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260247486.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:15 Heat of formation + Delta-G solvation = -27.175752 kcal Electronic energy + Delta-G solvation = -14465.136776 eV Core-core repulsion = 11966.209144 eV Total energy + Delta-G solvation = -2498.927633 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.29413 -39.61786 -37.25242 -34.27446 -33.45764 -32.28755 -29.59707 -26.52655 -26.19385 -23.92984 -22.98666 -21.14746 -18.65356 -18.07738 -17.39299 -16.65058 -16.53762 -16.08645 -15.88530 -15.69578 -15.36173 -15.04086 -14.33294 -14.13655 -14.03351 -13.21113 -12.89109 -12.68070 -12.63458 -12.46295 -11.68882 -11.27174 -11.12919 -10.60602 -10.29719 -10.16161 -10.00525 -9.30358 -8.13178 -6.17866 -0.37622 0.49440 1.39301 1.41690 1.44470 1.51294 2.43202 2.98523 3.07073 3.19537 3.68711 3.93184 4.16503 4.27705 4.31675 4.44092 4.55573 4.62398 4.77074 4.88208 5.01279 5.34567 5.43244 5.72374 5.79846 5.90748 6.22798 6.26931 6.48903 6.85080 6.92248 6.96560 7.46383 8.95072 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.010271 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.358758 B = 2725.489115 C = 3065.620861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.480 4.480 8 H 0.059 0.941 9 C 0.063 3.937 10 H 0.028 0.972 11 C 0.090 3.910 12 N -0.842 5.842 13 C -0.018 4.018 14 C -0.140 4.140 15 C 0.089 3.911 16 N -0.464 5.464 17 C -0.003 4.003 18 C 0.413 3.587 19 O -0.493 6.493 20 C -0.132 4.132 21 H 0.257 0.743 22 H 0.008 0.992 23 H 0.067 0.933 24 H 0.336 0.664 25 H 0.342 0.658 26 H 0.148 0.852 27 H 0.198 0.802 28 H 0.165 0.835 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -7.817 -5.787 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.518 4.518 8 H 0.077 0.923 9 C 0.044 3.956 10 H 0.046 0.954 11 C -0.041 4.041 12 N -0.372 5.372 13 C -0.026 4.026 14 C -0.159 4.159 15 C -0.071 4.071 16 N -0.177 5.177 17 C -0.137 4.137 18 C 0.272 3.728 19 O -0.365 6.365 20 C -0.153 4.153 21 H 0.066 0.934 22 H 0.026 0.974 23 H 0.086 0.914 24 H 0.148 0.852 25 H 0.155 0.845 26 H 0.166 0.834 27 H 0.215 0.785 28 H 0.180 0.820 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.944 -7.164 -6.493 10.442 hybrid contribution -0.310 0.583 1.323 1.478 sum 3.634 -6.580 -5.170 9.123 Atomic orbital electron populations 1.70055 1.07277 1.27013 1.51831 1.25688 0.95438 1.02388 0.95114 0.85720 0.79109 0.80026 0.77830 1.20689 1.21746 1.18757 1.21019 0.93314 0.89995 1.47489 0.92278 1.17972 0.97103 0.93953 0.86601 0.95414 1.21656 0.99554 0.94153 0.88752 1.58407 1.22248 1.52942 1.03628 1.21188 0.92309 0.89355 0.99789 1.22459 1.00014 0.98300 0.95171 1.23303 0.95406 0.95456 0.92919 1.67581 0.98439 1.13409 1.38257 1.22373 0.96627 1.02993 0.91726 1.24541 0.83883 0.69080 0.95283 1.90514 1.38545 1.38053 1.69390 1.22187 0.98630 0.98589 0.95941 0.93410 0.97386 0.91419 0.85169 0.84465 0.83397 0.78531 0.81955 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 12.85 21.44 0.28 -53.32 15 2 C 0.01 0.67 5.45 84.65 0.46 1.13 15 3 Si 0.95 43.57 29.54 68.60 2.03 45.59 15 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 15 7 C -0.48 -24.65 7.70 25.60 0.20 -24.45 15 8 H 0.06 3.00 7.82 -2.91 -0.02 2.98 15 9 C 0.06 2.92 2.20 -12.28 -0.03 2.89 15 10 H 0.03 1.49 7.20 -2.39 -0.02 1.48 15 11 C 0.09 3.41 5.91 86.30 0.51 3.92 15 12 N -0.84 -30.24 9.35 -186.71 -1.75 -31.99 15 13 C -0.02 -0.76 4.78 -19.69 -0.09 -0.85 15 14 C -0.14 -4.92 9.02 22.47 0.20 -4.72 15 15 C 0.09 2.67 11.18 84.85 0.95 3.62 15 16 N -0.46 -15.24 10.30 -185.16 -1.91 -17.15 15 17 C 0.00 -0.10 6.74 41.76 0.28 0.18 15 18 C 0.41 12.89 11.68 70.28 0.82 13.71 15 19 O -0.49 -19.08 17.14 -2.82 -0.05 -19.13 15 20 C -0.13 -5.75 9.29 22.66 0.21 -5.54 15 21 H 0.26 14.54 8.31 -92.71 -0.77 13.77 15 22 H 0.01 0.29 8.14 -2.38 -0.02 0.27 15 23 H 0.07 2.42 7.67 -2.39 -0.02 2.41 15 24 H 0.34 12.23 8.99 -89.69 -0.81 11.42 15 25 H 0.34 9.68 9.08 -89.70 -0.81 8.87 15 26 H 0.15 4.67 7.73 -2.91 -0.02 4.65 15 27 H 0.20 4.02 8.06 -2.91 -0.02 4.00 15 28 H 0.16 3.31 8.06 -2.91 -0.02 3.29 15 29 H 0.11 5.20 7.59 -2.91 -0.02 5.18 15 Total: -1.00 -65.24 263.10 1.67 -63.56 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.44 Total: 22.55 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 3.51 Total: -10.12 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.38 Total: -102.46 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -65.24 1.67 -63.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247486.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.387 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds