Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48501 * 109.47147 * 270.00399 * 3 2 1 5 5 H 1.48499 * 109.46797 * 29.99809 * 3 2 1 6 6 H 1.48500 * 109.47032 * 149.99940 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 N 1.46899 * 109.47244 * 300.00290 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38228 * 120.45530 * 79.71904 * 12 9 7 14 14 N 1.31895 * 120.92464 * 179.74861 * 13 12 9 15 15 C 1.31753 * 121.70093 * 0.53149 * 14 13 12 16 16 C 1.38561 * 120.47738 * 359.74824 * 15 14 13 17 17 C 1.38208 * 119.53039 * 359.97438 * 16 15 14 18 18 C 1.50930 * 107.47911 * 179.97438 * 16 15 14 19 19 O 1.43956 * 105.90683 * 342.36625 * 18 16 15 20 20 C 1.43922 * 104.93998 * 28.40340 * 19 18 16 21 21 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99833 * 299.99603 * 11 9 7 23 23 H 1.00901 * 111.00152 * 63.94840 * 11 9 7 24 24 H 1.08001 * 119.53904 * 359.97438 * 13 12 9 25 25 H 1.08001 * 120.86228 * 180.02562 * 17 16 15 26 26 H 1.09005 * 110.16133 * 101.47024 * 18 16 15 27 27 H 1.09000 * 110.16647 * 223.24908 * 18 16 15 28 28 H 1.09008 * 110.14396 * 212.39870 * 20 19 18 29 29 H 1.08999 * 110.20022 * 90.70363 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2303 -3.6447 -0.0005 13 6 2.8472 -4.0390 1.1719 14 7 3.7019 -5.0435 1.1834 15 6 4.0104 -5.7027 0.0852 16 6 3.4342 -5.3578 -1.1268 17 6 2.5294 -4.3143 -1.1785 18 6 3.9896 -6.2912 -2.1748 19 8 5.1768 -6.8679 -1.6001 20 6 4.9411 -6.8645 -0.1803 21 1 -0.4849 0.8401 0.0004 22 1 0.9652 -2.5261 2.0381 23 1 -0.3004 -1.8577 1.1911 24 1 2.6234 -3.5198 2.0921 25 1 2.0670 -4.0276 -2.1115 26 1 3.2651 -7.0729 -2.4036 27 1 4.2411 -5.7351 -3.0779 28 1 5.8798 -6.7236 0.3557 29 1 4.4714 -7.7994 0.1254 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260431468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = -7.306382 kcal Electronic energy + Delta-G solvation = -14455.246649 eV Core-core repulsion = 11957.180617 eV Total energy + Delta-G solvation = -2498.066032 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.68115 -37.93528 -34.99687 -32.32130 -31.72579 -30.01068 -28.15733 -26.05577 -24.89093 -22.99083 -21.63111 -20.02285 -16.88246 -16.59789 -16.40276 -15.89365 -15.63900 -14.70543 -13.90439 -13.85969 -13.41226 -13.01869 -12.69056 -12.61813 -12.38203 -12.02709 -11.51165 -11.33650 -10.99100 -10.88750 -10.24595 -10.13648 -9.96343 -9.14758 -8.89585 -8.67077 -8.11049 -7.35367 -6.22461 -4.40090 1.53648 1.79927 3.15778 3.23552 3.27519 3.99254 4.09773 4.17841 4.30346 4.68236 5.01552 5.22553 5.41428 5.45546 5.56063 5.58256 5.71771 5.81812 6.08323 6.15724 6.38568 6.49996 6.73814 6.76246 7.20304 7.47224 7.61453 7.91298 8.39910 8.51853 8.76949 8.96093 9.32685 10.75509 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.044206 B = 0.007280 C = 0.007017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.247499 B = 3845.433298 C = 3989.337201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.245 3.755 10 H 0.051 0.949 11 N -0.850 5.850 12 C -0.063 4.063 13 C 0.109 3.891 14 N -0.469 5.469 15 C 0.052 3.948 16 C -0.192 4.192 17 C -0.058 4.058 18 C 0.098 3.902 19 O -0.363 6.363 20 C 0.109 3.891 21 H 0.268 0.732 22 H 0.312 0.688 23 H 0.359 0.641 24 H 0.158 0.842 25 H 0.132 0.868 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 -8.584 -1.604 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.134 3.866 10 H 0.069 0.931 11 N -0.380 5.380 12 C -0.065 4.065 13 C -0.047 4.047 14 N -0.178 5.178 15 C -0.087 4.087 16 C -0.194 4.194 17 C -0.084 4.084 18 C 0.022 3.978 19 O -0.281 6.281 20 C 0.032 3.968 21 H 0.078 0.922 22 H 0.122 0.878 23 H 0.176 0.824 24 H 0.175 0.825 25 H 0.150 0.850 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.918 -9.510 -1.210 10.775 hybrid contribution 0.192 2.407 -0.538 2.474 sum 5.109 -7.103 -1.748 8.923 Atomic orbital electron populations 1.69737 1.05878 1.27507 1.49823 1.25011 0.94970 0.99420 0.94008 0.86465 0.79845 0.82626 0.78371 1.20425 1.20990 1.19774 1.21764 0.93647 0.90784 1.52723 0.92547 1.17950 0.88766 0.87598 0.92259 0.93097 1.59537 1.18410 1.56304 1.03782 1.21496 0.96644 0.95862 0.92537 1.22483 0.91468 0.92128 0.98599 1.66665 1.14253 1.07024 1.29862 1.21975 0.99157 0.97840 0.89740 1.21722 1.00776 0.99222 0.97728 1.20714 0.95785 0.92757 0.99167 1.21564 0.86931 0.94161 0.95190 1.89072 1.38004 1.82885 1.18101 1.21457 0.98577 0.94386 0.82376 0.92242 0.87793 0.82428 0.82524 0.85030 0.90652 0.88574 0.88175 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 11.54 55.43 0.64 -22.92 15 2 C 0.07 1.79 5.38 -17.82 -0.10 1.69 15 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.55 -14.20 8.71 -34.44 -0.30 -14.50 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.24 5.81 2.97 -70.02 -0.21 5.60 15 10 H 0.05 1.31 8.04 -51.93 -0.42 0.89 15 11 N -0.85 -19.30 9.02 -6.65 -0.06 -19.36 15 12 C -0.06 -1.33 4.91 -104.43 -0.51 -1.84 15 13 C 0.11 2.22 10.46 -17.53 -0.18 2.04 15 14 N -0.47 -9.14 10.36 -9.24 -0.10 -9.24 15 15 C 0.05 0.93 7.51 -82.25 -0.62 0.31 15 16 C -0.19 -3.30 6.34 -104.40 -0.66 -3.96 15 17 C -0.06 -1.10 9.82 -39.40 -0.39 -1.49 15 18 C 0.10 1.34 7.63 36.12 0.28 1.62 15 19 O -0.36 -5.30 11.72 -35.23 -0.41 -5.71 15 20 C 0.11 1.53 7.63 36.26 0.28 1.81 15 21 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 22 H 0.31 6.68 7.37 -39.29 -0.29 6.39 15 23 H 0.36 8.73 7.08 -39.29 -0.28 8.45 15 24 H 0.16 3.02 6.69 -52.49 -0.35 2.67 15 25 H 0.13 2.26 8.06 -52.49 -0.42 1.84 15 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.10 1.27 8.14 -51.92 -0.42 0.84 15 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 LS Contribution 250.69 15.07 3.78 3.78 Total: -1.00 -27.59 250.69 -6.58 -34.17 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -2.99 Total: 12.66 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.41 Total: -8.71 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.48 Total: -51.52 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.41 Total: -5.71 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.59 -6.58 -34.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.859 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds