Wall clock time and date at job start Mon Mar 30 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48501 * 109.47147 * 270.00399 * 3 2 1 5 5 H 1.48499 * 109.46797 * 29.99809 * 3 2 1 6 6 H 1.48500 * 109.47032 * 149.99940 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 N 1.46899 * 109.47244 * 300.00290 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38228 * 120.45530 * 79.71904 * 12 9 7 14 14 N 1.31895 * 120.92464 * 179.74861 * 13 12 9 15 15 C 1.31753 * 121.70093 * 0.53149 * 14 13 12 16 16 C 1.38561 * 120.47738 * 359.74824 * 15 14 13 17 17 C 1.38208 * 119.53039 * 359.97438 * 16 15 14 18 18 C 1.50930 * 107.47911 * 179.97438 * 16 15 14 19 19 O 1.43956 * 105.90683 * 342.36625 * 18 16 15 20 20 C 1.43922 * 104.93998 * 28.40340 * 19 18 16 21 21 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99833 * 299.99603 * 11 9 7 23 23 H 1.00901 * 111.00152 * 63.94840 * 11 9 7 24 24 H 1.08001 * 119.53904 * 359.97438 * 13 12 9 25 25 H 1.08001 * 120.86228 * 180.02562 * 17 16 15 26 26 H 1.09005 * 110.16133 * 101.47024 * 18 16 15 27 27 H 1.09000 * 110.16647 * 223.24908 * 18 16 15 28 28 H 1.09008 * 110.14396 * 212.39870 * 20 19 18 29 29 H 1.08999 * 110.20022 * 90.70363 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2303 -3.6447 -0.0005 13 6 2.8472 -4.0390 1.1719 14 7 3.7019 -5.0435 1.1834 15 6 4.0104 -5.7027 0.0852 16 6 3.4342 -5.3578 -1.1268 17 6 2.5294 -4.3143 -1.1785 18 6 3.9896 -6.2912 -2.1748 19 8 5.1768 -6.8679 -1.6001 20 6 4.9411 -6.8645 -0.1803 21 1 -0.4849 0.8401 0.0004 22 1 0.9652 -2.5261 2.0381 23 1 -0.3004 -1.8577 1.1911 24 1 2.6234 -3.5198 2.0921 25 1 2.0670 -4.0276 -2.1115 26 1 3.2651 -7.0729 -2.4036 27 1 4.2411 -5.7351 -3.0779 28 1 5.8798 -6.7236 0.3557 29 1 4.4714 -7.7994 0.1254 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260431468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:55 Heat of formation + Delta-G solvation = -27.168586 kcal Electronic energy + Delta-G solvation = -14456.107939 eV Core-core repulsion = 11957.180617 eV Total energy + Delta-G solvation = -2498.927322 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.02335 -39.25835 -36.76624 -33.98138 -33.31807 -31.56310 -29.40760 -27.93025 -26.27412 -24.67096 -22.92900 -21.62433 -18.70874 -18.01802 -17.80868 -17.21093 -17.09776 -16.40293 -15.55005 -15.15384 -15.03951 -14.53772 -14.34582 -13.95389 -13.61903 -13.47210 -13.17826 -13.05608 -12.83419 -12.61221 -12.04160 -11.90726 -11.22446 -10.82817 -10.55051 -10.26234 -9.56599 -9.24289 -8.18238 -6.44179 0.08796 0.30869 1.35652 1.38878 1.47877 2.32818 2.74588 2.81389 2.89697 3.00412 3.42669 3.94221 4.05442 4.18147 4.36088 4.41714 4.49629 4.60433 4.65643 4.73113 4.75531 5.03920 5.12518 5.53457 5.58382 5.63976 5.72265 5.98426 6.55274 6.82857 6.94246 7.05581 7.32667 8.76735 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.044206 B = 0.007280 C = 0.007017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.247499 B = 3845.433298 C = 3989.337201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.563 4.563 8 H 0.044 0.956 9 C 0.251 3.749 10 H 0.023 0.977 11 N -0.843 5.843 12 C -0.089 4.089 13 C 0.098 3.902 14 N -0.480 5.480 15 C 0.044 3.956 16 C -0.191 4.191 17 C -0.066 4.066 18 C 0.101 3.899 19 O -0.368 6.368 20 C 0.113 3.887 21 H 0.270 0.730 22 H 0.320 0.680 23 H 0.349 0.651 24 H 0.157 0.843 25 H 0.142 0.858 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 -9.576 -2.184 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.602 4.602 8 H 0.062 0.938 9 C 0.140 3.860 10 H 0.041 0.959 11 N -0.372 5.372 12 C -0.091 4.091 13 C -0.057 4.057 14 N -0.190 5.190 15 C -0.096 4.096 16 C -0.193 4.193 17 C -0.092 4.092 18 C 0.025 3.975 19 O -0.286 6.286 20 C 0.036 3.964 21 H 0.079 0.921 22 H 0.130 0.870 23 H 0.165 0.835 24 H 0.174 0.826 25 H 0.160 0.840 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.089 -10.512 -1.785 12.278 hybrid contribution -0.145 2.628 -0.385 2.660 sum 5.944 -7.884 -2.170 10.109 Atomic orbital electron populations 1.69821 1.06802 1.28235 1.50117 1.25670 0.95722 1.02138 0.93704 0.85557 0.78556 0.79240 0.78270 1.20172 1.20369 1.19963 1.21936 0.93144 0.92197 1.52971 0.93800 1.17716 0.88695 0.88221 0.91320 0.95900 1.59496 1.18166 1.55583 1.03961 1.21292 0.97481 0.96323 0.94039 1.22453 0.92092 0.92818 0.98357 1.66704 1.14298 1.07088 1.30884 1.22774 0.99144 0.98281 0.89410 1.22117 0.99486 0.98635 0.99089 1.20870 0.96285 0.93169 0.98842 1.21765 0.87101 0.94225 0.94406 1.89077 1.38412 1.82862 1.18247 1.21662 0.98672 0.93734 0.82333 0.92060 0.87024 0.83547 0.82611 0.84003 0.87919 0.86726 0.86653 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.60 11.54 21.45 0.25 -48.35 15 2 C 0.03 1.50 5.38 84.65 0.46 1.96 15 3 Si 0.96 41.83 29.54 68.60 2.03 43.85 15 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.56 -29.58 8.71 25.60 0.22 -29.36 15 8 H 0.04 2.37 7.74 -2.91 -0.02 2.34 15 9 C 0.25 12.23 2.97 43.42 0.13 12.36 15 10 H 0.02 1.23 8.04 -2.39 -0.02 1.21 15 11 N -0.84 -39.13 9.02 -174.95 -1.58 -40.71 15 12 C -0.09 -3.81 4.91 -19.74 -0.10 -3.90 15 13 C 0.10 4.01 10.46 84.68 0.89 4.90 15 14 N -0.48 -18.32 10.36 -183.14 -1.90 -20.22 15 15 C 0.04 1.47 7.51 42.81 0.32 1.79 15 16 C -0.19 -6.17 6.34 -19.72 -0.13 -6.30 15 17 C -0.07 -2.45 9.82 22.39 0.22 -2.23 15 18 C 0.10 2.41 7.63 71.31 0.54 2.95 15 19 O -0.37 -9.37 11.72 -148.98 -1.75 -11.12 15 20 C 0.11 2.78 7.63 71.40 0.54 3.32 15 21 H 0.27 13.70 8.31 -92.71 -0.77 12.93 15 22 H 0.32 13.96 7.37 -89.69 -0.66 13.30 15 23 H 0.35 17.37 7.08 -89.69 -0.63 16.74 15 24 H 0.16 6.15 6.69 -2.91 -0.02 6.13 15 25 H 0.14 4.84 8.06 -2.91 -0.02 4.81 15 26 H 0.10 1.96 8.14 -2.38 -0.02 1.94 15 27 H 0.11 2.35 8.14 -2.39 -0.02 2.33 15 28 H 0.12 2.52 8.14 -2.38 -0.02 2.50 15 29 H 0.11 2.11 8.14 -2.39 -0.02 2.09 15 Total: -1.00 -58.33 250.69 0.04 -58.29 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.11 Total: 32.76 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 3.10 Total: -14.50 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -3.23 Total: -109.28 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.75 Total: -11.12 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -58.33 0.04 -58.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.121 kcal (2) G-P(sol) polarization free energy of solvation -58.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds